Probiotic potential risk score
| ARGs (CARD) | VFs (VFDB) | PGs (PHI-base) | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| ARO accession | ARO name | Identity | Coverage | CARD name | Accession no. |
|---|---|---|---|---|---|
| ARO:3002628 | aad(6) | 100.00 | 109.42 | aad(6) | AY712687.1 |
| ARO:3002647 | APH(3')-IIIa | 100.00 | 100.00 | APH(3')-IIIa | CP004067.1 |
| ARO:3002897 | SAT-4 | 99.44 | 100.00 | SAT-4 | U01945.1 |
| ARO:3004480 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | 92.48 | 100.08 | Bado_rpoB_RIF | NC_008618.1 |
RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)
ResFinder
| Resistance gene | Identity | Coverage | Phenotype | Accession no. |
|---|---|---|---|---|
| ant(6)-Ia | 100.00 | 100.00 | Aminoglycoside resistance | AF330699 |
| aph(3')-III | 100.00 | 100.00 | Aminoglycoside resistance | M26832 |
ResFinder v4.0 (Database: resfinder_db, May 2022 release)
AMRFinderPlus
| Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|
| ant(6)-Ia | aminoglycoside nucleotidyltransferase ANT(6)-Ia | EXACTX | 100.00 | 100.00 | WP_001255866.1 |
| aph(3')-IIIa | aminoglycoside O-phosphotransferase APH(3')-IIIa | EXACTX | 100.00 | 100.00 | WP_001096887.1 |
| sat4 | streptothricin N-acetyltransferase Sat4 | EXACTX | 100.00 | 100.00 | WP_000627290.1 |
AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)
Virulence factors
Virulence Factor Database (VFDB)
| Gene ID | Gene name | Identity | Coverage | e-value | VF name | VF category | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)
VirulenceFinder
| Database | Virulence factor | Identity | Coverage | Protein function | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)
Pathogenic genes
PHI-base
| Protein ID | Gene name | Identity | Coverage | e-value | Function | Gene ID |
|---|---|---|---|---|---|---|
| No hit found | ||||||
BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)
Plasmid
PlasmidFinder
| Plasmid | Identity | Query / Template | Accession no. |
|---|---|---|---|
| No hit found | |||
PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)
Prophage
Phigaro
| Scaffold | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CP023199.1 | 345930 | 357262 | False | Siphoviridae | VOG9569, VOG5793, VOG5588, VOG5589, VOG5587, VOG4568, VOG4556, VOG4544, VOG4841 |
| CP023199.1 | 369616 | 396281 | False | Siphoviridae | VOG4583, VOG2038, VOG1154, VOG4544, VOG0720, VOG4576, VOG4555, VOG4553, VOG5504, VOG1581, VOG3409, VOG1159, VOG2639, VOG4557, VOG4582, VOG5793, VOG4605, VOG4599, VOG0933, VOG0979, VOG3298, VOG7888, VOG9502, VOG0731 |
| CP023199.1 | 1563722 | 1583095 | False | Siphoviridae | VOG4621, VOG1159, VOG1210, VOG0880, VOG4553, VOG4568, VOG4556, VOG4544, VOG0296, VOG2038, VOG2902, VOG0822, VOG8722, VOG5733, VOG4693, VOG0226, VOG1309, VOG4600, VOG2124, VOG7246, VOG4552, VOG7909, VOG1298 |
Phigaro v2.3.0 (Database: Aug. 2017 release)