Probiotic potential risk score
| ARGs (CARD) | VFs (VFDB) | PGs (PHI-base) | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| ARO accession | ARO name | Identity | Coverage | CARD name | Accession no. |
|---|---|---|---|---|---|
| ARO:3004626 | Erm(49) | 100.00 | 100.00 | Erm(49) | MWVR01000009.1 |
| ARO:3004480 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | 92.57 | 100.08 | Bado_rpoB_RIF | NC_008618.1 |
RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)
ResFinder
| Resistance gene | Identity | Coverage | Phenotype | Accession no. |
|---|---|---|---|---|
| tet(W) | 98.91 | 100.00 | Tetracycline resistance | AJ427422 |
ResFinder v4.0 (Database: resfinder_db, May 2022 release)
AMRFinderPlus
| Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|
| erm(49) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(49) | EXACTX | 100.00 | 100.00 | WP_019728092.1 |
| tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | PARTIALX | 97.52 | 63.22 | WP_063856418.1 |
AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)
Virulence factors
Virulence Factor Database (VFDB)
| Gene ID | Gene name | Identity | Coverage | e-value | VF name | VF category | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)
VirulenceFinder
| Database | Virulence factor | Identity | Coverage | Protein function | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)
Pathogenic genes
PHI-base
| Protein ID | Gene name | Identity | Coverage | e-value | Function | Gene ID |
|---|---|---|---|---|---|---|
| No hit found | ||||||
BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)
Plasmid
PlasmidFinder
| Plasmid | Identity | Query / Template | Accession no. |
|---|---|---|---|
| No hit found | |||
PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)
Prophage
Phigaro
| Scaffold | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CELR01000001.1 | 11130 | 24745 | True | Unknown | VOG0944, VOG0275, VOG0275, VOG0275, VOG0189, VOG0944, VOG0189 |
| CELR01000001.1 | 314320 | 330168 | False | Siphoviridae | VOG2624, VOG4545, VOG4582, VOG3651, VOG4557, VOG4621, VOG1159, VOG3409, VOG1581, VOG4553, VOG4555, VOG4576, VOG0720, VOG4544, VOG1574 |
| CELR01000001.1 | 617975 | 623240 | True | Unknown | VOG0944, VOG0275, VOG0275 |
| CELR01000001.1 | 762105 | 768086 | False | Siphoviridae | VOG0720, VOG2894, VOG4555, VOG4572, VOG1210 |
| CELR01000001.1 | 2264956 | 2279712 | False | Siphoviridae | VOG0275, VOG5946, VOG0641, VOG9570, VOG9569, VOG9762, VOG5588, VOG5589, VOG5587, VOG5088, VOG4568, VOG4556, VOG4544 |
Phigaro v2.3.0 (Database: Aug. 2017 release)