Probiotic potential risk score
| ARGs (CARD) | VFs (VFDB) | PGs (PHI-base) | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| ARO accession | ARO name | Identity | Coverage | CARD name | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)
ResFinder
| Resistance gene | Identity | Coverage | Phenotype | Accession no. |
|---|---|---|---|---|
| No hit found | ||||
ResFinder v4.0 (Database: resfinder_db, May 2022 release)
AMRFinderPlus
| Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)
Virulence factors
Virulence Factor Database (VFDB)
| Gene ID | Gene name | Identity | Coverage | e-value | VF name | VF category | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)
VirulenceFinder
| Database | Virulence factor | Identity | Coverage | Protein function | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)
Pathogenic genes
PHI-base
| Protein ID | Gene name | Identity | Coverage | e-value | Function | Gene ID |
|---|---|---|---|---|---|---|
| P0A355 | CspA | 80.30 | 98.51 | 4.76e-36 | Cold shock protein | CAA62903 |
BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)
Plasmid
PlasmidFinder
| Plasmid | Identity | Query / Template | Accession no. |
|---|---|---|---|
| No hit found | |||
PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)
Prophage
Phigaro
| Scaffold | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| QAKY01000058.1 | 19528 | 49631 | False | Siphoviridae | VOG5878, VOG5733, VOG3162, VOG10227, VOG3307, VOG0691, VOG0692, VOG5369, VOG7917, VOG9670, VOG6360, VOG3024, VOG1319, VOG0695, VOG0195, VOG0602, VOG9779, VOG0701, VOG9762, VOG10807, VOG4599, VOG5118, VOG0221 |
| QAKY01000058.1 | 66302 | 81337 | False | Siphoviridae | VOG5878, VOG5733, VOG3162, VOG10227, VOG3307, VOG0691, VOG0692, VOG5369, VOG7917, VOG9670, VOG6360, VOG3024, VOG1319, VOG0695, VOG0195 |
| QAKY01000106.1 | 8059 | 28565 | False | Siphoviridae | VOG7113, VOG2211, VOG0572, VOG2165, VOG2790, VOG6012, VOG2163, VOG4652, VOG1356, VOG5023, VOG4005, VOG4004, VOG9344, VOG0703, VOG2154, VOG4751, VOG2121, VOG2153, VOG2149, VOG2788, VOG2142, VOG1931, VOG1708 |
| QAKY01000035.1 | 14369 | 19742 | False | Unknown | VOG0451, VOG4609, VOG0327, VOG4548 |
Phigaro v2.3.0 (Database: Aug. 2017 release)