Probiotic potential risk score
| ARGs (CARD) | VFs (VFDB) | PGs (PHI-base) | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| ARO accession | ARO name | Identity | Coverage | CARD name | Accession no. |
|---|---|---|---|---|---|
| ARO:3004480 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | 98.40 | 100.00 | Bado_rpoB_RIF | NC_008618.1 |
| ARO:3000194 | tet(W) | 98.28 | 100.16 | tet(W) | AJ222769.3 |
RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)
ResFinder
| Resistance gene | Identity | Coverage | Phenotype | Accession no. |
|---|---|---|---|---|
| tet(W) | 99.38 | 100.00 | Tetracycline resistance | FN396364 |
ResFinder v4.0 (Database: resfinder_db, May 2022 release)
AMRFinderPlus
| Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|
| tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.22 | 100.00 | WP_050618045.1 |
AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)
Virulence factors
Virulence Factor Database (VFDB)
| Gene ID | Gene name | Identity | Coverage | e-value | VF name | VF category | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)
VirulenceFinder
| Database | Virulence factor | Identity | Coverage | Protein function | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)
Pathogenic genes
PHI-base
| Protein ID | Gene name | Identity | Coverage | e-value | Function | Gene ID |
|---|---|---|---|---|---|---|
| No hit found | ||||||
BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)
Plasmid
PlasmidFinder
| Plasmid | Identity | Query / Template | Accession no. |
|---|---|---|---|
| No hit found | |||
PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)
Prophage
Phigaro
| Scaffold | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| QSUK01000002.1 | 206123 | 241176 | False | Siphoviridae | VOG0010, VOG4552, VOG3998, VOG4693, VOG7534, VOG2534, VOG2537, VOG4632, VOG7215, VOG2038, VOG3028, VOG4544, VOG0720, VOG4576, VOG4555, VOG3676, VOG1581, VOG3409, VOG1159, VOG4557, VOG8867, VOG8867, VOG6163, VOG9722, VOG3416, VOG4763 |
| QSUK01000002.1 | 360511 | 388705 | False | Siphoviridae | VOG4728, VOG0275, VOG0713, VOG2624, VOG4545, VOG9762, VOG4621, VOG1159, VOG1158, VOG1210, VOG4553, VOG4568, VOG4556, VOG4544, VOG0296, VOG2038, VOG0196, VOG0052, VOG4636, VOG9438, VOG1243, VOG0226, VOG1309, VOG4600 |
Phigaro v2.3.0 (Database: Aug. 2017 release)