Probiotic potential risk score
| ARGs (CARD) | VFs (VFDB) | PGs (PHI-base) | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| ARO accession | ARO name | Identity | Coverage | CARD name | Accession no. |
|---|---|---|---|---|---|
| ARO:3004480 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | 98.40 | 100.00 | Bado_rpoB_RIF | NC_008618.1 |
| ARO:3000194 | tet(W) | 98.19 | 89.05 | tet(W) | AJ222769.3 |
RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)
ResFinder
| Resistance gene | Identity | Coverage | Phenotype | Accession no. |
|---|---|---|---|---|
| tet(W) | 98.91 | 99.95 | Tetracycline resistance | AJ427422 |
ResFinder v4.0 (Database: resfinder_db, May 2022 release)
AMRFinderPlus
| Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|
| tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | PARTIALX | 99.64 | 86.54 | WP_033493020.1 |
AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)
Virulence factors
Virulence Factor Database (VFDB)
| Gene ID | Gene name | Identity | Coverage | e-value | VF name | VF category | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)
VirulenceFinder
| Database | Virulence factor | Identity | Coverage | Protein function | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)
Pathogenic genes
PHI-base
| Protein ID | Gene name | Identity | Coverage | e-value | Function | Gene ID |
|---|---|---|---|---|---|---|
| No hit found | ||||||
BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)
Plasmid
PlasmidFinder
| Plasmid | Identity | Query / Template | Accession no. |
|---|---|---|---|
| No hit found | |||
PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)
Prophage
Phigaro
| Scaffold | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| QRXC01000001.1 | 433575 | 450161 | False | Siphoviridae | VOG1521, VOG2038, VOG1154, VOG4544, VOG0720, VOG4576, VOG4553, VOG4553, VOG5504, VOG1581, VOG4589, VOG1154, VOG4557, VOG4545, VOG2624 |
| QRXC01000015.1 | 14691 | 27134 | False | Siphoviridae | VOG4319, VOG4555, VOG2894, VOG0720, VOG5101, VOG2043, VOG2038, VOG4559, VOG2902, VOG8722, VOG5733, VOG1243 |
| QRXC01000005.1 | 46223 | 57008 | False | Siphoviridae | VOG4556, VOG4568, VOG4553, VOG5587, VOG5589, VOG5588, VOG5793, VOG4545, VOG9569, VOG9570 |
Phigaro v2.3.0 (Database: Aug. 2017 release)