Probiotic potential risk score
| ARGs (CARD) | VFs (VFDB) | PGs (PHI-base) | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| ARO accession | ARO name | Identity | Coverage | CARD name | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)
ResFinder
| Resistance gene | Identity | Coverage | Phenotype | Accession no. |
|---|---|---|---|---|
| No hit found | ||||
ResFinder v4.0 (Database: resfinder_db, May 2022 release)
AMRFinderPlus
| Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)
Virulence factors
Virulence Factor Database (VFDB)
| Gene ID | Gene name | Identity | Coverage | e-value | VF name | VF category | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)
VirulenceFinder
| Database | Virulence factor | Identity | Coverage | Protein function | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)
Pathogenic genes
PHI-base
| Protein ID | Gene name | Identity | Coverage | e-value | Function | Gene ID |
|---|---|---|---|---|---|---|
| S4E4Q5 | WalR | 84.68 | 99.57 | 4.75e-145 | Transcriptional regulatory protein | EPH95667 |
| Q82ZX2 | CspR | 89.39 | 98.51 | 1.10e-40 | Cold shock protein | AAO82613 |
BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)
Plasmid
PlasmidFinder
| Plasmid | Identity | Query / Template | Accession no. |
|---|---|---|---|
| rep38 | 88.29 | 1042 / 1104 | CP002655 |
PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)
Prophage
Phigaro
| Scaffold | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LKFR01000006.1 | 19988 | 47365 | False | Siphoviridae | VOG5353, VOG0181, VOG10867, VOG4600, VOG1309, VOG11003, VOG4566, VOG0189, VOG4900, VOG5998, VOG5562, VOG4693, VOG0744, VOG4673, VOG4841, VOG0519, VOG4544, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG1898, VOG4545, VOG4633, VOG4763, VOG3498, VOG0648, VOG1637 |
| LKFR01000006.1 | 226919 | 236188 | False | Siphoviridae | VOG4606, VOG4841, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204, VOG4589 |
| LKFR01000007.1 | 443671 | 466981 | False | Siphoviridae | VOG6495, VOG8294, VOG0703, VOG0753, VOG7896, VOG6455, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG4568, VOG4556, VOG0202, VOG1886, VOG4581 |
| LKFR01000008.1 | 48437 | 92808 | False | Siphoviridae | VOG4682, VOG4649, VOG0602, VOG7017, VOG4599, VOG4605, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1322, VOG1887, VOG3434, VOG4555, VOG1183, VOG1300, VOG4564, VOG0720, VOG4544, VOG0796, VOG4570, VOG3477, VOG0198, VOG2338, VOG7530, VOG4713, VOG0044, VOG3643, VOG0152, VOG4567, VOG0536, VOG9860, VOG11003, VOG0226, VOG4855, VOG0186, VOG1309, VOG5709, VOG1305, VOG4846, VOG9667, VOG0862, VOG9231, VOG3479, VOG6422, VOG0275 |
| LKFR01000010.1 | 233730 | 266364 | False | Siphoviridae | VOG4918, VOG0703, VOG7017, VOG0861, VOG7896, VOG6455, VOG4599, VOG4605, VOG5852, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844, VOG4841, VOG4549, VOG10904, VOG4570, VOG0198, VOG1563, VOG0044, VOG3643, VOG0152, VOG4567, VOG9741, VOG4693, VOG7735, VOG0025, VOG4799 |
Phigaro v2.3.0 (Database: Aug. 2017 release)