Probiotic potential risk score
| ARGs (CARD) | VFs (VFDB) | PGs (PHI-base) | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| ARO accession | ARO name | Identity | Coverage | CARD name | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)
ResFinder
| Resistance gene | Identity | Coverage | Phenotype | Accession no. |
|---|---|---|---|---|
| No hit found | ||||
ResFinder v4.0 (Database: resfinder_db, May 2022 release)
AMRFinderPlus
| Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)
Virulence factors
Virulence Factor Database (VFDB)
| Gene ID | Gene name | Identity | Coverage | e-value | VF name | VF category | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)
VirulenceFinder
| Database | Virulence factor | Identity | Coverage | Protein function | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)
Pathogenic genes
PHI-base
| Protein ID | Gene name | Identity | Coverage | e-value | Function | Gene ID |
|---|---|---|---|---|---|---|
| S4E4Q5 | WalR | 84.68 | 99.57 | 5.04e-145 | Transcriptional regulatory protein | EPH95667 |
| Q82ZX2 | CspR | 89.39 | 98.51 | 4.15e-41 | Cold shock protein | AAO82613 |
BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)
Plasmid
PlasmidFinder
| Plasmid | Identity | Query / Template | Accession no. |
|---|---|---|---|
| repUS75 | 100.00 | 1059 / 1059 | CP002393 |
PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)
Prophage
Phigaro
| Scaffold | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LKGG01000016.1 | 59409 | 72225 | False | Siphoviridae | VOG4632, VOG4609, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204, VOG4589, VOG8284 |
| LKGG01000021.1 | 37704 | 42534 | False | Unknown | VOG8241, VOG0535, VOG0322, VOG0226, VOG0189 |
| LKGG01000021.1 | 51390 | 72560 | False | Siphoviridae | VOG0796, VOG4544, VOG0691, VOG0692, VOG4555, VOG4711, VOG3480, VOG0695, VOG0696, VOG0697, VOG0698, VOG5587, VOG5601, VOG9763, VOG0701, VOG4705, VOG4605, VOG4599, VOG4705, VOG0861, VOG7017 |
| LKGG01000029.1 | 234360 | 276559 | False | Siphoviridae | VOG6083, VOG4649, VOG0602, VOG7017, VOG0861, VOG4683, VOG4619, VOG0801, VOG4545, VOG1323, VOG0725, VOG0799, VOG1321, VOG5660, VOG1320, VOG4713, VOG1322, VOG0694, VOG4555, VOG1183, VOG4564, VOG0720, VOG10227, VOG3699, VOG0822, VOG4570, VOG0198, VOG2338, VOG7530, VOG9280, VOG0044, VOG9671, VOG3643, VOG0152, VOG4567, VOG4693, VOG6623, VOG9860, VOG0226, VOG4566, VOG0186, VOG1309, VOG2338 |
| LKGG01000034.1 | 130836 | 140794 | False | Siphoviridae | VOG4632, VOG4606, VOG0205, VOG4841, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204 |
Phigaro v2.3.0 (Database: Aug. 2017 release)