Probiotic potential risk score
| ARGs (CARD) | VFs (VFDB) | PGs (PHI-base) | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| ARO accession | ARO name | Identity | Coverage | CARD name | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)
ResFinder
| Resistance gene | Identity | Coverage | Phenotype | Accession no. |
|---|---|---|---|---|
| No hit found | ||||
ResFinder v4.0 (Database: resfinder_db, May 2022 release)
AMRFinderPlus
| Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)
Virulence factors
Virulence Factor Database (VFDB)
| Gene ID | Gene name | Identity | Coverage | e-value | VF name | VF category | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)
VirulenceFinder
| Database | Virulence factor | Identity | Coverage | Protein function | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)
Pathogenic genes
PHI-base
| Protein ID | Gene name | Identity | Coverage | e-value | Function | Gene ID |
|---|---|---|---|---|---|---|
| P0A355 | CspA | 80.30 | 98.51 | 5.90e-36 | Cold shock protein | CAA62903 |
BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)
Plasmid
PlasmidFinder
| Plasmid | Identity | Query / Template | Accession no. |
|---|---|---|---|
| No hit found | |||
PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)
Prophage
Phigaro
| Scaffold | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CP035054.1 | 463415 | 504538 | True | Siphoviridae | VOG0221, VOG0221, VOG0221, VOG2576, VOG9502, VOG0641, VOG4589, VOG4589, VOG0204, VOG4553, VOG4573, VOG4556, VOG4544, VOG7439, VOG4571, VOG4581, VOG8909, VOG0198, VOG4548, VOG0327, VOG4606, VOG4552, VOG0026, VOG0021, VOG1047, VOG7438, VOG11003, VOG4548, VOG3801, VOG6495, VOG0221 |
| CP035054.1 | 1495132 | 1531638 | False | Siphoviridae | VOG4824, VOG0703, VOG1637, VOG10223, VOG4856, VOG9997, VOG10972, VOG4619, VOG0801, VOG4545, VOG0701, VOG9763, VOG0698, VOG0697, VOG0696, VOG0695, VOG4711, VOG4555, VOG0692, VOG0691, VOG10227, VOG0796, VOG0198, VOG4657, VOG9671, VOG4693, VOG8685, VOG0189, VOG4799, VOG6545, VOG0322, VOG0535, VOG4552, VOG9667, VOG0248, VOG7424 |
| CP035054.1 | 1600748 | 1636015 | False | Siphoviridae | VOG6371, VOG0054, VOG1637, VOG8438, VOG10972, VOG3462, VOG0801, VOG6163, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG4553, VOG4568, VOG4556, VOG4544, VOG4581, VOG4841, VOG1315, VOG3477, VOG0198, VOG3307, VOG8685, VOG0327, VOG4606, VOG6545, VOG4548, VOG0322, VOG0321, VOG2228, VOG9667, VOG9667, VOG0862 |
| CP035054.1 | 2127746 | 2140722 | False | Siphoviridae | VOG10457, VOG8295, VOG0025, VOG6085, VOG0226, VOG0205 |
Phigaro v2.3.0 (Database: Aug. 2017 release)