Probiotic potential risk score
| ARGs (CARD) | VFs (VFDB) | PGs (PHI-base) | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| ARO accession | ARO name | Identity | Coverage | CARD name | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)
ResFinder
| Resistance gene | Identity | Coverage | Phenotype | Accession no. |
|---|---|---|---|---|
| No hit found | ||||
ResFinder v4.0 (Database: resfinder_db, May 2022 release)
AMRFinderPlus
| Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)
Virulence factors
Virulence Factor Database (VFDB)
| Gene ID | Gene name | Identity | Coverage | e-value | VF name | VF category | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)
VirulenceFinder
| Database | Virulence factor | Identity | Coverage | Protein function | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)
Pathogenic genes
PHI-base
| Protein ID | Gene name | Identity | Coverage | e-value | Function | Gene ID |
|---|---|---|---|---|---|---|
| S4E4Q5 | WalR | 84.68 | 99.57 | 4.57e-145 | Transcriptional regulatory protein | EPH95667 |
| Q82ZX2 | CspR | 89.39 | 98.51 | 3.76e-41 | Cold shock protein | AAO82613 |
BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)
Plasmid
PlasmidFinder
| Plasmid | Identity | Query / Template | Accession no. |
|---|---|---|---|
| No hit found | |||
PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)
Prophage
Phigaro
| Scaffold | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| SCEM01000001.1 | 467151 | 480437 | False | Siphoviridae | VOG10867, VOG4799, VOG0189, VOG0982, VOG0047, VOG10489, VOG0198, VOG3251, VOG4570, VOG10904, VOG4549, VOG5088, VOG5361, VOG6455, VOG7896 |
| SCEM01000001.1 | 732274 | 743743 | False | Siphoviridae | VOG6495, VOG3622, VOG6450, VOG0181, VOG4967, VOG3642, VOG0685, VOG0283, VOG0514, VOG0226, VOG4566, VOG0189, VOG7018, VOG9860, VOG0536, VOG9741, VOG0195, VOG0275, VOG4643 |
| SCEM01000001.1 | 748095 | 771572 | False | Siphoviridae | VOG4570, VOG10904, VOG4549, VOG1345, VOG4841, VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG5852, VOG6163, VOG5088, VOG4605, VOG4599, VOG6455, VOG7896, VOG1637, VOG0703 |
| SCEM01000001.1 | 965734 | 974914 | False | Siphoviridae | VOG4632, VOG4606, VOG0205, VOG4841, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568 |
Phigaro v2.3.0 (Database: Aug. 2017 release)