Probiotic potential risk score
| ARGs (CARD) | VFs (VFDB) | PGs (PHI-base) | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| ARO accession | ARO name | Identity | Coverage | CARD name | Accession no. |
|---|---|---|---|---|---|
| ARO:3002629 | ANT(6)-Ib | 100.00 | 100.00 | ANT(6)-Ib | FN594949.1 |
| ARO:3002897 | SAT-4 | 99.44 | 100.00 | SAT-4 | U01945.1 |
| ARO:3000556 | tet(44) | 98.75 | 100.00 | tet(44) | FN594949.1 |
RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)
ResFinder
| Resistance gene | Identity | Coverage | Phenotype | Accession no. |
|---|---|---|---|---|
| ant(6)-Ib | 100.00 | 100.00 | Aminoglycoside resistance | FN594949 |
| tet(44) | 98.96 | 100.00 | Tetracycline resistance | FN594949 |
| lnu(C) | 93.57 | 88.28 | Lincosamide resistance | AY928180 |
ResFinder v4.0 (Database: resfinder_db, May 2022 release)
AMRFinderPlus
| Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|
| ant(6)-Ib | aminoglycoside nucleotidyltransferase ANT(6)-Ib | EXACTX | 100.00 | 100.00 | WP_003454325.1 |
| sat4 | streptothricin N-acetyltransferase Sat4 | EXACTX | 100.00 | 100.00 | WP_000627290.1 |
| tet(44) | tetracycline resistance ribosomal protection protein Tet(44) | BLASTX | 98.75 | 100.00 | WP_063855884.1 |
| aph(3')-IIIa | aminoglycoside O-phosphotransferase APH(3')-IIIa | BLASTX | 95.08 | 100.00 | WP_001096887.1 |
| lnu(C) | lincosamide nucleotidyltransferase Lnu(C) | PARTIALX | 87.85 | 65.24 | WP_063851341.1 |
AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)
Virulence factors
Virulence Factor Database (VFDB)
| Gene ID | Gene name | Identity | Coverage | e-value | VF name | VF category | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)
VirulenceFinder
| Database | Virulence factor | Identity | Coverage | Protein function | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)
Pathogenic genes
PHI-base
| Protein ID | Gene name | Identity | Coverage | e-value | Function | Gene ID |
|---|---|---|---|---|---|---|
| No hit found | ||||||
BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)
Plasmid
PlasmidFinder
| Plasmid | Identity | Query / Template | Accession no. |
|---|---|---|---|
| No hit found | |||
PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)
Prophage
Phigaro
| Scaffold | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| SFMS01000005.1 | 31429 | 38394 | False | Podoviridae | VOG2105, VOG4672, VOG2163, VOG2386, VOG0045 |
| SFMS01000010.1 | 26811 | 38091 | False | Myoviridae | VOG0157, VOG0686, VOG6603, VOG4559, VOG0676, VOG1026, VOG3808, VOG0226, VOG3412 |
Phigaro v2.3.0 (Database: Aug. 2017 release)