Probiotic potential risk score
| ARGs (CARD) | VFs (VFDB) | PGs (PHI-base) | PPRS |
|---|---|---|---|
| 0 | 0 | 10 | 10.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| ARO accession | ARO name | Identity | Coverage | CARD name | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)
ResFinder
| Resistance gene | Identity | Coverage | Phenotype | Accession no. |
|---|---|---|---|---|
| mef(A) | 94.24 | 99.75 | Macrolide resistance | AF227520 |
| msr(D) | 92.90 | 99.11 | Macrolide, Lincosamide and Streptogramin B resistance | AF274302 |
ResFinder v4.0 (Database: resfinder_db, May 2022 release)
AMRFinderPlus
| Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|
| mef(A) | macrolide efflux MFS transporter Mef(A) | EXACTX | 100.00 | 100.00 | WP_012102963.1 |
| msr(D) | ABC-F type ribosomal protection protein Msr(D) | BLASTX | 92.99 | 99.59 | WP_000420313.1 |
AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)
Virulence factors
Virulence Factor Database (VFDB)
| Gene ID | Gene name | Identity | Coverage | e-value | VF name | VF category | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)
VirulenceFinder
| Database | Virulence factor | Identity | Coverage | Protein function | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)
Pathogenic genes
PHI-base
| Protein ID | Gene name | Identity | Coverage | e-value | Function | Gene ID |
|---|---|---|---|---|---|---|
| W8TRT9 | tufA | 85.75 | 99.24 | 0.0 | Elongation factor Tu | AHM69299 |
| B3GXB6 | pdxS | 83.79 | 97.97 | 0.0 | Encodes the putative pyridoxal 5-phosphate synthase subunit PdxS | ACE61268 |
| Q2FWE8 | atpA | 80.08 | 99.80 | 0.0 | ATP synthase subunit alpha | ABD31377 |
| B7HLG1 | CodY | 81.85 | 99.62 | 1.43e-150 | Nutrient-responsive regulator | ACJ80679 |
| S4E4Q5 | WalR | 81.62 | 99.15 | 2.78e-141 | Transcriptional regulatory protein | EPH95667 |
| P63786 | ClpP | 83.68 | 96.94 | 9.67e-120 | Part of proteolytic complex | BAB94595 |
| Q9RGX0 | spxA1 | 88.55 | 99.24 | 4.89e-85 | Redox-responsive transcription factor | AAF21893 |
| Q724L7 | SpoVG | 82.72 | 78.64 | 6.98e-48 | RNA-Binding Protein | AAT02994 |
| P0A355 | CspA | 83.08 | 97.01 | 1.13e-37 | Cold shock protein | CAA62903 |
| Q92AD0 | CspD | 81.54 | 97.01 | 4.48e-37 | Cold shock protein | CAC99957 |
BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)
Plasmid
PlasmidFinder
| Plasmid | Identity | Query / Template | Accession no. |
|---|---|---|---|
| No hit found | |||
PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)
Prophage
Phigaro
| Scaffold | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CP033687.1 | 11925 | 40472 | False | Siphoviridae | VOG0703, VOG4918, VOG8197, VOG5008, VOG3498, VOG4763, VOG4599, VOG4605, VOG3379, VOG0701, VOG10044, VOG7238, VOG0698, VOG0697, VOG0696, VOG0695, VOG5007, VOG4572, VOG9317, VOG1183, VOG0692, VOG0691, VOG10227, VOG0796, VOG3412, VOG0198, VOG10904, VOG8445 |
| CP033687.1 | 47823 | 55141 | False | Siphoviridae | VOG0189, VOG4799, VOG1309, VOG4600, VOG1879, VOG1878, VOG3549, VOG8241, VOG4552 |
Phigaro v2.3.0 (Database: Aug. 2017 release)