Probiotic potential risk score
| ARGs (CARD) | VFs (VFDB) | PGs (PHI-base) | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| ARO accession | ARO name | Identity | Coverage | CARD name | Accession no. |
|---|---|---|---|---|---|
| ARO:3002844 | vatE | 97.20 | 100.00 | vatE | AF242872.1 |
| ARO:3000194 | tet(W) | 97.02 | 100.16 | tet(W) | AJ222769.3 |
RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)
ResFinder
| Resistance gene | Identity | Coverage | Phenotype | Accession no. |
|---|---|---|---|---|
| tet(W) | 99.06 | 99.64 | Tetracycline resistance | FN396364 |
| vat(E) | 96.43 | 100.00 | Streptogramin B resistance | AJ488494 |
ResFinder v4.0 (Database: resfinder_db, May 2022 release)
AMRFinderPlus
| Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|
| tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.69 | 99.84 | WP_000691721.1 |
| vat(E) | streptogramin A O-acetyltransferase Vat(E) | BLASTX | 99.53 | 100.00 | WP_063856929.1 |
AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)
Virulence factors
Virulence Factor Database (VFDB)
| Gene ID | Gene name | Identity | Coverage | e-value | VF name | VF category | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)
VirulenceFinder
| Database | Virulence factor | Identity | Coverage | Protein function | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)
Pathogenic genes
PHI-base
| Protein ID | Gene name | Identity | Coverage | e-value | Function | Gene ID |
|---|---|---|---|---|---|---|
| P0A355 | CspA | 84.61 | 97.01 | 3.91e-36 | Cold shock protein | CAA62903 |
BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)
Plasmid
PlasmidFinder
| Plasmid | Identity | Query / Template | Accession no. |
|---|---|---|---|
| repUS67 | 95.19 | 1039 / 1039 | CP006012 |
PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)
Prophage
Phigaro
| Scaffold | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CP030089.1 | 654337 | 661538 | False | Myoviridae / Siphoviridae | VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG0686 |
| CP030089.1 | 662283 | 684059 | False | Siphoviridae | VOG3307, VOG0198, VOG8946, VOG0796, VOG10227, VOG0720, VOG4564, VOG4555, VOG1319, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4633, VOG4910, VOG0348, VOG8438, VOG4705 |
| CP030089.1 | 820589 | 843631 | False | Siphoviridae | VOG4618, VOG4544, VOG5821, VOG0691, VOG0692, VOG4555, VOG4572, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701, VOG6163, VOG0801, VOG4619, VOG4904, VOG4856, VOG5357, VOG4705 |
| CP030089.1 | 1214824 | 1239697 | False | Siphoviridae | VOG9998, VOG8001, VOG0054, VOG1637, VOG4856, VOG7388, VOG10972, VOG0801, VOG4545, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4568, VOG4556, VOG1886, VOG4581, VOG4841, VOG1345 |
| CP030089.1 | 1279403 | 1307528 | False | Siphoviridae | VOG5068, VOG4615, VOG0703, VOG8917, VOG4705, VOG8438, VOG1154, VOG3462, VOG0801, VOG6163, VOG9471, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG4553, VOG4568, VOG4556, VOG4544, VOG4581, VOG4841, VOG0866, VOG0198, VOG7111 |
Phigaro v2.3.0 (Database: Aug. 2017 release)