Probiotic potential risk score
| ARGs (CARD) | VFs (VFDB) | PGs (PHI-base) | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| ARO accession | ARO name | Identity | Coverage | CARD name | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)
ResFinder
| Resistance gene | Identity | Coverage | Phenotype | Accession no. |
|---|---|---|---|---|
| No hit found | ||||
ResFinder v4.0 (Database: resfinder_db, May 2022 release)
AMRFinderPlus
| Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)
Virulence factors
Virulence Factor Database (VFDB)
| Gene ID | Gene name | Identity | Coverage | e-value | VF name | VF category | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)
VirulenceFinder
| Database | Virulence factor | Identity | Coverage | Protein function | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)
Pathogenic genes
PHI-base
| Protein ID | Gene name | Identity | Coverage | e-value | Function | Gene ID |
|---|---|---|---|---|---|---|
| P0A355 | CspA | 83.08 | 97.01 | 2.11e-35 | Cold shock protein | CAA62903 |
BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)
Plasmid
PlasmidFinder
| Plasmid | Identity | Query / Template | Accession no. |
|---|---|---|---|
| No hit found | |||
PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)
Prophage
Phigaro
| Scaffold | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CP041676.1 | 711830 | 720490 | False | Siphoviridae | VOG2228, VOG5095, VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG6495, VOG0327, VOG5395 |
| CP041676.1 | 1055962 | 1085389 | False | Siphoviridae | VOG0703, VOG1637, VOG4626, VOG9997, VOG0565, VOG10972, VOG3462, VOG0801, VOG6163, VOG0209, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG1886, VOG4581, VOG4841, VOG0195, VOG0866, VOG0198, VOG3468 |
| CP041676.1 | 1427458 | 1436620 | False | Siphoviridae | VOG9667, VOG0862, VOG0275, VOG7188, VOG0918, VOG5818 |
| CP041676.1 | 1561945 | 1603280 | False | Siphoviridae | VOG0641, VOG0648, VOG0565, VOG10608, VOG1335, VOG1334, VOG1333, VOG4634, VOG0704, VOG1900, VOG1330, VOG4713, VOG1887, VOG3434, VOG4555, VOG4564, VOG0720, VOG4544, VOG0796, VOG0376, VOG8923, VOG0195, VOG0195, VOG4571, VOG9592, VOG0198, VOG0536, VOG5278, VOG1183, VOG0638, VOG5722, VOG3307, VOG0189, VOG8647, VOG0514, VOG0226, VOG0322, VOG0535, VOG4552, VOG9667, VOG9667, VOG4602 |
Phigaro v2.3.0 (Database: Aug. 2017 release)