Probiotic potential risk score

ARGs (CARD)	VFs (VFDB)	PGs (PHI-base)	PPRS
5	10	8	13.75

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes

Comprehensive Antibiotic Resistance Database (CARD)

ARO accession	ARO name	Identity	Coverage	CARD name	Accession no.
ARO:3003064	ykkD	97.14	100.00	ykkD	AL009126.1
ARO:3002813	lmrB	95.60	100.42	lmrB	JYFL01000006.1
ARO:3006902	BSU-1	93.63	100.00	BSU-1	NG_050942.1
ARO:3004476	vmlR	91.53	99.45	vmlR	NC_000964.3
ARO:3003059	tmrB	88.83	100.00	tmrB	AL009126.3

RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)

ResFinder

Resistance gene	Identity	Coverage	Phenotype	Accession no.
No hit found

ResFinder v4.0 (Database: resfinder_db, May 2022 release)

AMRFinderPlus

Gene symbol	Sequence name	Method	Identity	Coverage	Accession no.
blaBSU	BSU family class D beta-lactamase	BLASTX	93.63	100.00	WP_003235647.1
vmlR	ABC-F type ribosomal protection protein VmlR	BLASTX	91.53	98.90	WP_003234144.1

AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)

Virulence factors

Virulence Factor Database (VFDB)

Gene ID	Gene name	Identity	Coverage	e-value	VF name	VF category	Accession no.
VFG016295	capC	97.33	100.00	0.0	Capsule	Immune modulation	NP_391470
VFG016299	capB	94.92	100.00	0.0	Capsule	Immune modulation	NP_391471
VFG016291	capA	92.83	100.00	0.0	Capsule	Immune modulation	NP_391469
VFG016303	dep/capD	92.74	100.00	0.0	Capsule	Immune modulation	NP_389723
VFG016234	hlyIII	92.52	100.00	0.0	Hemolysin III	Exotoxin	NP_390062
VFG049999	dhbA	92.24	100.00	0.0	Bacillibactin	Nutritional/Metabolic factor	NP_391080
VFG050021	dhbE	91.30	100.00	0.0	Bacillibactin	Nutritional/Metabolic factor	NP_391078
VFG050043	dhbF	91.14	100.00	0.0	Bacillibactin	Nutritional/Metabolic factor	NP_391076
VFG050032	dhbB	91.07	99.68	0.0	Bacillibactin	Nutritional/Metabolic factor	NP_391077
VFG050010	dhbC	89.39	100.00	0.0	Bacillibactin	Nutritional/Metabolic factor	NP_391079

BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)

VirulenceFinder

Database	Virulence factor	Identity	Coverage	Protein function	Accession no.
No hit found

VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)

Pathogenic genes

PHI-base

Protein ID	Gene name	Identity	Coverage	e-value	Function	Gene ID
W8TRT9	tufA	85.79	99.24	0.0	Elongation factor Tu	AHM69299
B3GXB6	pdxS	84.14	97.97	0.0	Encodes the putative pyridoxal 5�-phosphate synthase subunit PdxS	ACE61268
B7HLG1	CodY	81.08	99.62	4.77e-148	Nutrient-responsive regulator	ACJ80679
Q9RGX0	spxA1	83.97	99.24	3.31e-83	Redox-responsive transcription factor	AAF21893
Q724L7	SpoVG	82.72	78.64	2.34e-47	RNA-Binding Protein	AAT02994
P0A355	CspA	90.91	98.51	8.61e-40	Cold shock protein	CAA62903
Q92AD0	CspD	81.54	97.01	2.01e-36	Cold shock protein	CAC99957
P0A357	CspB	84.61	97.01	1.35e-34	Cold shock protein	CAD00094

BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)

Plasmid

PlasmidFinder

Plasmid	Identity	Query / Template	Accession no.
No hit found

PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)

Prophage

Phigaro

Scaffold	Begin	End	Transposable	Taxonomy	pVOGs
VTEJ01000002.1	280308	305470	False	Siphoviridae	VOG0136, VOG5221, VOG4705, VOG4612, VOG4660, VOG4772, VOG0801, VOG5910, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG1125, VOG4553, VOG4568, VOG4556, VOG3607, VOG1886, VOG4581, VOG0713, VOG4841, VOG10900, VOG3691, VOG0275, VOG0198
VTEJ01000007.1	195343	223139	False	Myoviridae	VOG0753, VOG4705, VOG7718, VOG4862, VOG4691, VOG4550, VOG3894, VOG4885, VOG4865, VOG6163, VOG3892, VOG3891, VOG3890, VOG0749, VOG4685, VOG4773, VOG10227, VOG0796, VOG5447, VOG4861, VOG0189, VOG4799, VOG9667, VOG4602

Phigaro v2.3.0 (Database: Aug. 2017 release)