Probiotic potential risk score
| ARGs (CARD) | VFs (VFDB) | PGs (PHI-base) | PPRS |
|---|---|---|---|
| 0 | 0 | 11 | 11.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| ARO accession | ARO name | Identity | Coverage | CARD name | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)
ResFinder
| Resistance gene | Identity | Coverage | Phenotype | Accession no. |
|---|---|---|---|---|
| No hit found | ||||
ResFinder v4.0 (Database: resfinder_db, May 2022 release)
AMRFinderPlus
| Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|
| fosM3 | fosfomycin resistance protein FosM3 | BLASTX | 80.71 | 98.59 | WP_204376221.1 |
AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)
Virulence factors
Virulence Factor Database (VFDB)
| Gene ID | Gene name | Identity | Coverage | e-value | VF name | VF category | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)
VirulenceFinder
| Database | Virulence factor | Identity | Coverage | Protein function | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)
Pathogenic genes
PHI-base
| Protein ID | Gene name | Identity | Coverage | e-value | Function | Gene ID |
|---|---|---|---|---|---|---|
| W8TRT9 | tufA | 87.85 | 99.75 | 0.0 | Elongation factor Tu | AHM69299 |
| B3GXB6 | pdxS | 84.83 | 97.97 | 0.0 | Encodes the putative pyridoxal 5-phosphate synthase subunit PdxS | ACE61268 |
| Q2FWE8 | atpA | 80.68 | 99.80 | 0.0 | ATP synthase subunit alpha | ABD31377 |
| B7HLG1 | CodY | 84.17 | 99.62 | 3.16e-152 | Nutrient-responsive regulator | ACJ80679 |
| P63786 | ClpP | 81.58 | 96.94 | 1.17e-115 | Part of proteolytic complex | BAB94595 |
| P66860 | smpB | 81.17 | 99.35 | 4.63e-95 | RNA-binding protein | CAD00526 |
| Q9RGX0 | spxA1 | 91.60 | 99.24 | 8.63e-88 | Redox-responsive transcription factor | AAF21893 |
| Q724L7 | SpoVG | 83.75 | 77.67 | 1.20e-47 | RNA-Binding Protein | AAT02994 |
| Q2FID9 | nfu | 81.08 | 91.36 | 3.77e-40 | aids in the maturation of Iron-Sulphur proteins | ABD20438 |
| P0A357 | CspB | 86.36 | 98.51 | 3.96e-37 | Cold shock protein | CAD00094 |
| Q92AD0 | CspD | 84.61 | 97.01 | 7.36e-37 | Cold shock protein | CAC99957 |
BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)
Plasmid
PlasmidFinder
| Plasmid | Identity | Query / Template | Accession no. |
|---|---|---|---|
| No hit found | |||
PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)
Prophage
Phigaro
| Scaffold | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.3.0 (Database: Aug. 2017 release)