Probiotic potential risk score
| ARGs (CARD) | VFs (VFDB) | PGs (PHI-base) | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| ARO accession | ARO name | Identity | Coverage | CARD name | Accession no. |
|---|---|---|---|---|---|
| ARO:3003730 | Bifidobacterium bifidum ileS conferring resistance to mupirocin | 99.46 | 100.09 | Bbif_ileS_MUP | CP001840.1 |
| ARO:3004480 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | 91.30 | 103.46 | Bado_rpoB_RIF | NC_008618.1 |
RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)
ResFinder
| Resistance gene | Identity | Coverage | Phenotype | Accession no. |
|---|---|---|---|---|
| tet(W) | 99.95 | 100.00 | Tetracycline resistance | AJ427422 |
ResFinder v4.0 (Database: resfinder_db, May 2022 release)
AMRFinderPlus
| Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|
| tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | PARTIALX | 98.27 | 63.22 | WP_002586627.1 |
AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)
Virulence factors
Virulence Factor Database (VFDB)
| Gene ID | Gene name | Identity | Coverage | e-value | VF name | VF category | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)
VirulenceFinder
| Database | Virulence factor | Identity | Coverage | Protein function | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)
Pathogenic genes
PHI-base
| Protein ID | Gene name | Identity | Coverage | e-value | Function | Gene ID |
|---|---|---|---|---|---|---|
| No hit found | ||||||
BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)
Plasmid
PlasmidFinder
| Plasmid | Identity | Query / Template | Accession no. |
|---|---|---|---|
| No hit found | |||
PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)
Prophage
Phigaro
| Scaffold | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| WDOH01000002.1 | 362752 | 375963 | False | Siphoviridae | VOG4544, VOG4556, VOG4568, VOG5587, VOG5589, VOG7634, VOG5793, VOG9569, VOG0641, VOG9502, VOG0275 |
| WDOH01000003.1 | 104916 | 127608 | False | Myoviridae | VOG5012, VOG2090, VOG8190, VOG0052, VOG0382, VOG5689, VOG11016, VOG4548, VOG0384, VOG2484 |
| WDOH01000003.1 | 195652 | 203336 | False | Siphoviridae | VOG2090, VOG11075, VOG0585, VOG3304, VOG0010, VOG4602 |
| WDOH01000005.1 | 173849 | 189220 | True | Unknown | VOG0944, VOG0275, VOG0275, VOG0275, VOG1837, VOG2090, VOG2090 |
| WDOH01000006.1 | 123814 | 153230 | False | Siphoviridae | VOG0992, VOG0136, VOG0991, VOG6914, VOG3578, VOG4599, VOG4605, VOG5793, VOG5601, VOG1581, VOG0880, VOG4553, VOG4576, VOG0720, VOG5101, VOG2560, VOG9852, VOG4841, VOG0376, VOG2545, VOG2038, VOG2538, VOG0943, VOG5782, VOG9343 |
| WDOH01000006.1 | 158210 | 168326 | False | Siphoviridae | VOG5277, VOG4602, VOG3594, VOG0275, VOG4571, VOG2842 |
Phigaro v2.3.0 (Database: Aug. 2017 release)