Probiotic potential risk score
| ARGs (CARD) | VFs (VFDB) | PGs (PHI-base) | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| ARO accession | ARO name | Identity | Coverage | CARD name | Accession no. |
|---|---|---|---|---|---|
| ARO:3002835 | lnuA | 97.52 | 100.00 | lnuA | M14039.1 |
RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)
ResFinder
| Resistance gene | Identity | Coverage | Phenotype | Accession no. |
|---|---|---|---|---|
| lnu(A) | 98.77 | 100.00 | Lincosamide resistance | M14039 |
ResFinder v4.0 (Database: resfinder_db, May 2022 release)
AMRFinderPlus
| Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|
| lnu(A) | lincosamide nucleotidyltransferase Lnu(A) | EXACTX | 100.00 | 100.00 | WP_001829870.1 |
AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)
Virulence factors
Virulence Factor Database (VFDB)
| Gene ID | Gene name | Identity | Coverage | e-value | VF name | VF category | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)
VirulenceFinder
| Database | Virulence factor | Identity | Coverage | Protein function | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)
Pathogenic genes
PHI-base
| Protein ID | Gene name | Identity | Coverage | e-value | Function | Gene ID |
|---|---|---|---|---|---|---|
| P0A355 | CspA | 83.08 | 97.01 | 1.75e-35 | Cold shock protein | CAA62903 |
BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)
Plasmid
PlasmidFinder
| Plasmid | Identity | Query / Template | Accession no. |
|---|---|---|---|
| No hit found | |||
PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)
Prophage
Phigaro
| Scaffold | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| QKPW01000015.1 | 5113 | 37333 | False | Siphoviridae | VOG2228, VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG3307, VOG8065, VOG10303, VOG1183, VOG7043, VOG9531, VOG3307, VOG0198, VOG1063, VOG0796, VOG0796, VOG10227, VOG0720, VOG4564, VOG1300, VOG10914, VOG1319, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG0727, VOG4599, VOG5007, VOG0648 |
| QKPW01000001.1 | 66761 | 104884 | False | Siphoviridae | VOG8520, VOG5063, VOG4552, VOG0979, VOG6450, VOG11077, VOG4925, VOG5278, VOG0283, VOG0514, VOG0226, VOG4799, VOG0189, VOG0586, VOG3307, VOG4693, VOG0198, VOG4373, VOG0376, VOG3699, VOG10227, VOG0720, VOG4564, VOG4555, VOG4711, VOG4713, VOG8555, VOG4329, VOG0725, VOG0817, VOG0801, VOG3462, VOG10972, VOG7534, VOG5070, VOG1637, VOG0703 |
Phigaro v2.3.0 (Database: Aug. 2017 release)