Probiotic potential risk score
| ARGs (CARD) | VFs (VFDB) | PGs (PHI-base) | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| ARO accession | ARO name | Identity | Coverage | CARD name | Accession no. |
|---|---|---|---|---|---|
| ARO:3000375 | ErmB | 99.60 | 100.00 | ErmB | AF242872.1 |
| ARO:3002837 | lnuC | 98.17 | 100.00 | lnuC | AY928180.1 |
| ARO:3000194 | tet(W) | 95.53 | 94.84 | tet(W) | AJ222769.3 |
RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)
ResFinder
| Resistance gene | Identity | Coverage | Phenotype | Accession no. |
|---|---|---|---|---|
| erm(B) | 99.73 | 100.00 | Macrolide resistance | AF242872 |
| lnu(C) | 99.19 | 100.00 | Lincosamide resistance | AY928180 |
| tet(W) | 98.91 | 99.95 | Tetracycline resistance | FN396364 |
ResFinder v4.0 (Database: resfinder_db, May 2022 release)
AMRFinderPlus
| Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|
| aad9 | ANT(9) family aminoglycoside nucleotidyltransferase | BLASTX | 99.61 | 100.00 | WP_002578722.1 |
| erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 99.60 | 100.00 | WP_032489723.1 |
| lnu(C) | lincosamide nucleotidyltransferase Lnu(C) | BLASTX | 98.17 | 100.00 | WP_063851341.1 |
| tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | INTERNAL_STOP | 94.25 | 95.31 | WP_063856418.1 |
AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)
Virulence factors
Virulence Factor Database (VFDB)
| Gene ID | Gene name | Identity | Coverage | e-value | VF name | VF category | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)
VirulenceFinder
| Database | Virulence factor | Identity | Coverage | Protein function | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)
Pathogenic genes
PHI-base
| Protein ID | Gene name | Identity | Coverage | e-value | Function | Gene ID |
|---|---|---|---|---|---|---|
| No hit found | ||||||
BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)
Plasmid
PlasmidFinder
| Plasmid | Identity | Query / Template | Accession no. |
|---|---|---|---|
| No hit found | |||
PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)
Prophage
Phigaro
| Scaffold | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CP039266.1 | 1214937 | 1244044 | False | Siphoviridae | VOG0703, VOG5087, VOG0861, VOG5307, VOG3631, VOG4599, VOG0727, VOG6163, VOG0800, VOG0725, VOG0799, VOG0724, VOG9583, VOG0723, VOG4713, VOG1319, VOG10914, VOG4564, VOG0720, VOG4544, VOG0796, VOG1739, VOG0198, VOG6005, VOG10904, VOG4609, VOG6545, VOG0322, VOG9542, VOG2228, VOG9190 |
Phigaro v2.3.0 (Database: Aug. 2017 release)