Probiotic potential risk score


ARGs (CARD) VFs (VFDB) PGs (PHI-base) PPRS
2022.83

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

ARO accession ARO name Identity Coverage CARD name Accession no.
ARO:3000186tet(M)98.75100.31tet(M)AB039845.1
ARO:3000179tet(L)98.25100.00tet(L)M11036.1

RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)

ResFinder

Resistance gene Identity Coverage Phenotype Accession no.
tet(L)99.4999.93Tetracycline resistanceAY081910
tet(M)99.48100.00Tetracycline resistanceX75073

ResFinder v4.0 (Database: resfinder_db, May 2022 release)

AMRFinderPlus

Gene symbol Sequence name Method Identity Coverage Accession no.
tet(M)tetracycline resistance ribosomal protection protein Tet(M)BLASTX99.38100.00WP_000691727.1
tet(L)tetracycline efflux MFS transporter Tet(L)BLASTX98.69100.00WP_002294500.1

AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)

Virulence factors


Virulence Factor Database (VFDB)

Gene ID Gene name Identity Coverage e-value VF name VF category Accession no.
No hit found

BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)

VirulenceFinder

Database Virulence factor Identity Coverage Protein function Accession no.
No hit found

VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)

Pathogenic genes


PHI-base

Protein ID Gene name Identity Coverage e-value Function Gene ID
S4E4Q5WalR85.59100.002.98e-148Transcriptional regulatory proteinEPH95667
Q82ZX2CspR81.8298.512.57e-36Cold shock proteinAAO82613

BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)

Plasmid


PlasmidFinder

Plasmid Identity Query / Template Accession no.
repUS4399.831206 / 1206CP003584

PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)

Prophage


Phigaro

Scaffold Begin End Transposable Taxonomy pVOGs
No hit found

Phigaro v2.3.0 (Database: Aug. 2017 release)