Probiotic potential risk score
| ARGs (CARD) | VFs (VFDB) | PGs (PHI-base) | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| ARO accession | ARO name | Identity | Coverage | CARD name | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)
ResFinder
| Resistance gene | Identity | Coverage | Phenotype | Accession no. |
|---|---|---|---|---|
| No hit found | ||||
ResFinder v4.0 (Database: resfinder_db, May 2022 release)
AMRFinderPlus
| Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)
Virulence factors
Virulence Factor Database (VFDB)
| Gene ID | Gene name | Identity | Coverage | e-value | VF name | VF category | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)
VirulenceFinder
| Database | Virulence factor | Identity | Coverage | Protein function | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)
Pathogenic genes
PHI-base
| Protein ID | Gene name | Identity | Coverage | e-value | Function | Gene ID |
|---|---|---|---|---|---|---|
| Q82ZX2 | CspR | 81.82 | 98.51 | 2.52e-36 | Cold shock protein | AAO82613 |
BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)
Plasmid
PlasmidFinder
| Plasmid | Identity | Query / Template | Accession no. |
|---|---|---|---|
| No hit found | |||
PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)
Prophage
Phigaro
| Scaffold | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| RHMA01000029.1 | 113179 | 136079 | False | Myoviridae / Siphoviridae | VOG5235, VOG0083, VOG0382, VOG0384, VOG0205, VOG0226, VOG6085, VOG0025, VOG8295, VOG1176, VOG10457, VOG1292 |
| RHMA01000006.1 | 242544 | 253604 | True | Myoviridae / Siphoviridae | VOG1355, VOG4624, VOG5088, VOG4357, VOG1026, VOG1292 |
| RHMA01000025.1 | 833 | 19766 | False | Siphoviridae | VOG5660, VOG0723, VOG4713, VOG1319, VOG10914, VOG8945, VOG4564, VOG0720, VOG10227, VOG7312, VOG4618, VOG0198, VOG4566, VOG0226, VOG0186, VOG1309, VOG2228, VOG4552, VOG9667, VOG0862, VOG2785 |
| RHMA01000023.1 | 103066 | 131258 | False | Siphoviridae | VOG0703, VOG7004, VOG8917, VOG10223, VOG4856, VOG9997, VOG3405, VOG10972, VOG3462, VOG0801, VOG8263, VOG6698, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG4544, VOG4581 |
| RHMA01000023.1 | 141407 | 148513 | False | Siphoviridae | VOG3307, VOG10631, VOG8685, VOG0189, VOG4566, VOG0514, VOG0226, VOG0186, VOG1309 |
| RHMA01000024.1 | 97218 | 103298 | False | Unknown | VOG8294, VOG0641, VOG0648 |
Phigaro v2.3.0 (Database: Aug. 2017 release)