Probiotic potential risk score
| ARGs (CARD) | VFs (VFDB) | PGs (PHI-base) | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| ARO accession | ARO name | Identity | Coverage | CARD name | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)
ResFinder
| Resistance gene | Identity | Coverage | Phenotype | Accession no. |
|---|---|---|---|---|
| No hit found | ||||
ResFinder v4.0 (Database: resfinder_db, May 2022 release)
AMRFinderPlus
| Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)
Virulence factors
Virulence Factor Database (VFDB)
| Gene ID | Gene name | Identity | Coverage | e-value | VF name | VF category | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)
VirulenceFinder
| Database | Virulence factor | Identity | Coverage | Protein function | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)
Pathogenic genes
PHI-base
| Protein ID | Gene name | Identity | Coverage | e-value | Function | Gene ID |
|---|---|---|---|---|---|---|
| P0A355 | CspA | 83.08 | 97.01 | 1.82e-35 | Cold shock protein | CAA62903 |
BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)
Plasmid
PlasmidFinder
| Plasmid | Identity | Query / Template | Accession no. |
|---|---|---|---|
| No hit found | |||
PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)
Prophage
Phigaro
| Scaffold | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CP051129.1 | 818314 | 845021 | False | Siphoviridae | VOG8453, VOG0866, VOG4841, VOG4581, VOG1886, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG4545, VOG0801, VOG3462, VOG3463, VOG8257, VOG5070, VOG5008, VOG6602, VOG1637, VOG0054 |
| CP051129.1 | 897663 | 907679 | False | Siphoviridae | VOG4662, VOG0682, VOG9267, VOG9667, VOG4552, VOG0521, VOG7526, VOG7341, VOG0535, VOG0322, VOG0226, VOG0514, VOG4799, VOG0189, VOG5133, VOG4552 |
| CP051129.1 | 913436 | 935150 | False | Siphoviridae | VOG4618, VOG0612, VOG10227, VOG0720, VOG4564, VOG1300, VOG4555, VOG1329, VOG4713, VOG1353, VOG0724, VOG0799, VOG0725, VOG6163, VOG0801, VOG3462, VOG1927, VOG7568, VOG4705 |
| CP051129.1 | 1988486 | 2005974 | False | Siphoviridae | VOG4619, VOG0801, VOG5793, VOG0701, VOG9763, VOG0698, VOG0697, VOG0696, VOG0695, VOG4572, VOG4555, VOG0692, VOG0691, VOG10227 |
| CP051129.1 | 2042727 | 2058214 | True | Unknown | VOG8916, VOG8916, VOG5088, VOG0944, VOG5088, VOG1026, VOG0944, VOG8387, VOG0944, VOG8387, VOG5088, VOG0979, VOG8387, VOG11015, VOG0979, VOG0198 |
Phigaro v2.3.0 (Database: Aug. 2017 release)