Probiotic potential risk score


ARGs (CARD) VFs (VFDB) PGs (PHI-base) PPRS
2012.24

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

ARO accession ARO name Identity Coverage CARD name Accession no.
ARO:3002835lnuA97.52100.00lnuAM14039.1
ARO:3000194tet(W)96.55100.94tet(W)AJ222769.3

RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)

ResFinder

Resistance gene Identity Coverage Phenotype Accession no.
tet(W)98.8599.64Tetracycline resistanceFN396364
lnu(A)98.77100.00Lincosamide resistanceM14039

ResFinder v4.0 (Database: resfinder_db, May 2022 release)

AMRFinderPlus

Gene symbol Sequence name Method Identity Coverage Accession no.
lnu(A)lincosamide nucleotidyltransferase Lnu(A)EXACTX100.00100.00WP_001829870.1
tet(W)tetracycline resistance ribosomal protection protein Tet(W)BLASTX99.6999.84WP_003672618.1

AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)

Virulence factors


Virulence Factor Database (VFDB)

Gene ID Gene name Identity Coverage e-value VF name VF category Accession no.
No hit found

BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)

VirulenceFinder

Database Virulence factor Identity Coverage Protein function Accession no.
No hit found

VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)

Pathogenic genes


PHI-base

Protein ID Gene name Identity Coverage e-value Function Gene ID
P0A355CspA84.6197.014.09e-36Cold shock proteinCAA62903

BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)

Plasmid


PlasmidFinder

Plasmid Identity Query / Template Accession no.
repUS6797.881040 / 1039CP006012

PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)

Prophage


Phigaro

Scaffold Begin End Transposable Taxonomy pVOGs
JABAFN010000001.12897584507TrueSiphoviridaeVOG0686, VOG7111, VOG0198, VOG4357, VOG1026, VOG0866, VOG0195, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568, VOG4553, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG9471, VOG6163, VOG0801, VOG3462, VOG4887, VOG5008, VOG8917, VOG0703, VOG4615, VOG7176, VOG1198, VOG0275, VOG0275, VOG10077, VOG4602, VOG8520, VOG8520, VOG8214, VOG6459, VOG9469, VOG0707, VOG3478, VOG7812, VOG5692, VOG4955, VOG0226, VOG0514, VOG4799, VOG8318, VOG9078, VOG0686, VOG0686, VOG0638, VOG1183, VOG4693, VOG5474, VOG6495
JABAFN010000001.1107389134932FalseSiphoviridaeVOG0866, VOG4841, VOG4581, VOG4544, VOG1345, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG4545, VOG0801, VOG3462, VOG3463, VOG4856, VOG9896, VOG4334, VOG4705, VOG4868, VOG0641, VOG0703, VOG4824, VOG9091
JABAFN010000010.1433133954FalseSiphoviridaeVOG2228, VOG1302, VOG0321, VOG8222, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG3307, VOG0713, VOG3307, VOG0198, VOG8946, VOG0796, VOG10227, VOG0720, VOG4564, VOG7533, VOG4555, VOG1319, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4633, VOG6163, VOG5008
JABAFN010000030.1926913275FalseSiphoviridaeVOG8353, VOG10618, VOG0650, VOG2687, VOG9667, VOG0275
JABAFN010000008.12841054111FalseSiphoviridaeVOG4606, VOG0198, VOG4570, VOG1345, VOG4841, VOG4581, VOG1886, VOG4556, VOG4568, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG0801, VOG10972, VOG4856, VOG1637, VOG0054

Phigaro v2.3.0 (Database: Aug. 2017 release)