Probiotic potential risk score
| ARGs (CARD) | VFs (VFDB) | PGs (PHI-base) | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| ARO accession | ARO name | Identity | Coverage | CARD name | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)
ResFinder
| Resistance gene | Identity | Coverage | Phenotype | Accession no. |
|---|---|---|---|---|
| No hit found | ||||
ResFinder v4.0 (Database: resfinder_db, May 2022 release)
AMRFinderPlus
| Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)
Virulence factors
Virulence Factor Database (VFDB)
| Gene ID | Gene name | Identity | Coverage | e-value | VF name | VF category | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)
VirulenceFinder
| Database | Virulence factor | Identity | Coverage | Protein function | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)
Pathogenic genes
PHI-base
| Protein ID | Gene name | Identity | Coverage | e-value | Function | Gene ID |
|---|---|---|---|---|---|---|
| P0A355 | CspA | 83.08 | 97.01 | 6.03e-36 | Cold shock protein | CAA62903 |
BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)
Plasmid
PlasmidFinder
| Plasmid | Identity | Query / Template | Accession no. |
|---|---|---|---|
| repUS67 | 90.07 | 997 / 1039 | CP006012 |
PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)
Prophage
Phigaro
| Scaffold | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| VTTA01000001.1 | 5100 | 14789 | False | Siphoviridae | VOG0536, VOG0018, VOG0018, VOG1198, VOG5068, VOG4692 |
| VTTA01000001.1 | 26360 | 58417 | False | Unknown | VOG10614, VOG0275, VOG0054, VOG0753, VOG0648, VOG9091, VOG10609, VOG4763, VOG5534, VOG7628, VOG7629, VOG6036, VOG6941, VOG6246, VOG6524, VOG6031, VOG5721, VOG10877, VOG5461, VOG4544, VOG5722 |
| VTTA01000010.1 | 2172 | 31776 | False | Siphoviridae | VOG6163, VOG0083, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG1886, VOG1886, VOG5068, VOG4581, VOG4841, VOG7807, VOG0531, VOG10618, VOG0198, VOG6140, VOG3468, VOG4552, VOG0536, VOG8966, VOG6183, VOG0189, VOG8647, VOG0226, VOG0283, VOG9708, VOG5345, VOG2228, VOG4552, VOG5063, VOG8520, VOG0862, VOG5944 |
| VTTA01000019.1 | 10881 | 20192 | False | Unknown | VOG0052, VOG7438, VOG1047, VOG0021, VOG0026, VOG4606 |
| VTTA01000020.1 | 7325 | 15819 | False | Unknown | VOG0377, VOG5757, VOG0025, VOG7627, VOG4570 |
| VTTA01000008.1 | 4710 | 15860 | True | Siphoviridae | VOG4544, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG0641, VOG0221, VOG0221, VOG5413 |
Phigaro v2.3.0 (Database: Aug. 2017 release)