Probiotic potential risk score
| ARGs (CARD) | VFs (VFDB) | PGs (PHI-base) | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| ARO accession | ARO name | Identity | Coverage | CARD name | Accession no. |
|---|---|---|---|---|---|
| ARO:3000186 | tet(M) | 98.13 | 100.47 | tet(M) | AB039845.1 |
| ARO:3002704 | fexA | 97.47 | 100.00 | fexA | AJ549214.1 |
RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)
ResFinder
| Resistance gene | Identity | Coverage | Phenotype | Accession no. |
|---|---|---|---|---|
| fexA | 99.16 | 100.00 | Phenicol resistance | AJ549214 |
| tet(M) | 98.55 | 100.00 | Tetracycline resistance | AM990992 |
ResFinder v4.0 (Database: resfinder_db, May 2022 release)
AMRFinderPlus
| Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|
| tet(M) | tetracycline resistance ribosomal protection protein Tet(M) | BLASTX | 98.13 | 100.00 | WP_000691727.1 |
| fexA | chloramphenicol/florfenicol efflux MFS transporter FexA | BLASTX | 97.47 | 100.00 | WP_015585966.1 |
AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)
Virulence factors
Virulence Factor Database (VFDB)
| Gene ID | Gene name | Identity | Coverage | e-value | VF name | VF category | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)
VirulenceFinder
| Database | Virulence factor | Identity | Coverage | Protein function | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)
Pathogenic genes
PHI-base
| Protein ID | Gene name | Identity | Coverage | e-value | Function | Gene ID |
|---|---|---|---|---|---|---|
| P0A355 | CspA | 84.61 | 97.01 | 3.92e-36 | Cold shock protein | CAA62903 |
BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)
Plasmid
PlasmidFinder
| Plasmid | Identity | Query / Template | Accession no. |
|---|---|---|---|
| repUS67 | 95.54 | 1031 / 1039 | CP006012 |
PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)
Prophage
Phigaro
| Scaffold | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CP054657.1 | 687418 | 728813 | False | Siphoviridae | VOG5353, VOG4156, VOG3325, VOG5378, VOG0275, VOG4662, VOG8483, VOG0862, VOG9667, VOG7581, VOG4552, VOG2228, VOG9708, VOG0283, VOG0226, VOG5046, VOG0189, VOG5133, VOG0536, VOG6214, VOG0686, VOG0638, VOG1183, VOG0198, VOG4841, VOG4581, VOG1886, VOG4556, VOG4568, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG6163, VOG0801, VOG3462, VOG3463, VOG6917, VOG4856, VOG4334, VOG7896, VOG4868, VOG8917, VOG0703, VOG8294 |
| CP054658.1 | 41865 | 48853 | True | Unknown | VOG5088, VOG5088, VOG0275, VOG0275, VOG8643, VOG5088, VOG8916, VOG5332 |
Phigaro v2.3.0 (Database: Aug. 2017 release)