Probiotic potential risk score
| ARGs (CARD) | VFs (VFDB) | PGs (PHI-base) | PPRS |
|---|---|---|---|
| 0 | 0 | 0 | 0.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| ARO accession | ARO name | Identity | Coverage | CARD name | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)
ResFinder
| Resistance gene | Identity | Coverage | Phenotype | Accession no. |
|---|---|---|---|---|
| No hit found | ||||
ResFinder v4.0 (Database: resfinder_db, May 2022 release)
AMRFinderPlus
| Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)
Virulence factors
Virulence Factor Database (VFDB)
| Gene ID | Gene name | Identity | Coverage | e-value | VF name | VF category | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)
VirulenceFinder
| Database | Virulence factor | Identity | Coverage | Protein function | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)
Pathogenic genes
PHI-base
| Protein ID | Gene name | Identity | Coverage | e-value | Function | Gene ID |
|---|---|---|---|---|---|---|
| No hit found | ||||||
BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)
Plasmid
PlasmidFinder
| Plasmid | Identity | Query / Template | Accession no. |
|---|---|---|---|
| No hit found | |||
PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)
Prophage
Phigaro
| Scaffold | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CP054875.1 | 67784 | 73030 | False | Siphoviridae | VOG0275, VOG0787, VOG1638, VOG4602, VOG0513, VOG4552 |
| CP054875.1 | 74980 | 82814 | False | Siphoviridae | VOG9888, VOG3556, VOG3478, VOG0321, VOG4548, VOG10660, VOG0322, VOG6545, VOG4632 |
| CP054875.1 | 85092 | 107888 | False | Siphoviridae | VOG6414, VOG2188, VOG7235, VOG0327, VOG6005, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG10939, VOG0207, VOG4586, VOG4545, VOG4633, VOG4659, VOG4612 |
| CP054875.1 | 161701 | 189643 | False | Siphoviridae | VOG0275, VOG7017, VOG0861, VOG0648, VOG8224, VOG10608, VOG1335, VOG6163, VOG1334, VOG1333, VOG4634, VOG0704, VOG1353, VOG1330, VOG4713, VOG1887, VOG3434, VOG4555, VOG4564, VOG7038, VOG0720, VOG4544, VOG0796, VOG0198, VOG0327 |
| CP054875.1 | 205084 | 214107 | False | Siphoviridae | VOG1638, VOG1300, VOG11077, VOG0862, VOG3304, VOG6330, VOG0682, VOG0275, VOG0918 |
| CP054875.1 | 1628424 | 1655917 | False | Siphoviridae | VOG4581, VOG1886, VOG4571, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG8609, VOG0207, VOG4586, VOG0209, VOG6163, VOG4633, VOG4612, VOG9945, VOG4705, VOG0861, VOG5042, VOG0703 |
| CP054875.1 | 2033851 | 2070762 | False | Siphoviridae | VOG8294, VOG0703, VOG8181, VOG0861, VOG4705, VOG5008, VOG5859, VOG4619, VOG0801, VOG4545, VOG0701, VOG9763, VOG0698, VOG0697, VOG0696, VOG0695, VOG1329, VOG4555, VOG5047, VOG0692, VOG0691, VOG4544, VOG0796, VOG3477, VOG0198, VOG4693, VOG11077, VOG5046, VOG0283, VOG0685, VOG1300, VOG4552, VOG4603, VOG6495, VOG3304, VOG5088, VOG9312 |
Phigaro v2.3.0 (Database: Aug. 2017 release)