Probiotic potential risk score
| ARGs (CARD) | VFs (VFDB) | PGs (PHI-base) | PPRS |
|---|---|---|---|
| 2 | 0 | 2 | 2.83 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| ARO accession | ARO name | Identity | Coverage | CARD name | Accession no. |
|---|---|---|---|---|---|
| ARO:3000375 | ErmB | 98.78 | 98.79 | ErmB | AF242872.1 |
| ARO:3004455 | Streptococcus suis chloramphenicol acetyltransferase | 94.61 | 94.44 | Ssui_ACT_CHL | AB080798.1 |
RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)
ResFinder
| Resistance gene | Identity | Coverage | Phenotype | Accession no. |
|---|---|---|---|---|
| cat(pC194) | 100.00 | 94.78 | Phenicol resistance | NC_002013 |
| erm(B) | 99.59 | 100.00 | Macrolide resistance | X72021 |
ResFinder v4.0 (Database: resfinder_db, May 2022 release)
AMRFinderPlus
| Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|
| erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 98.78 | 100.00 | WP_001038795.1 |
| cat-TC | type A-9 chloramphenicol O-acetyltransferase Cat-TC | INTERNAL_STOP | 92.07 | 94.54 | WP_032488880.1 |
AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)
Virulence factors
Virulence Factor Database (VFDB)
| Gene ID | Gene name | Identity | Coverage | e-value | VF name | VF category | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)
VirulenceFinder
| Database | Virulence factor | Identity | Coverage | Protein function | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)
Pathogenic genes
PHI-base
| Protein ID | Gene name | Identity | Coverage | e-value | Function | Gene ID |
|---|---|---|---|---|---|---|
| S4E4Q5 | WalR | 85.59 | 100.00 | 2.90e-148 | Transcriptional regulatory protein | EPH95667 |
| Q82ZX2 | CspR | 81.82 | 98.51 | 2.50e-36 | Cold shock protein | AAO82613 |
BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)
Plasmid
PlasmidFinder
| Plasmid | Identity | Query / Template | Accession no. |
|---|---|---|---|
| No hit found | |||
PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)
Prophage
Phigaro
| Scaffold | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JACBGJ010000003.1 | 2891 | 8587 | False | Myoviridae | VOG0573, VOG4550, VOG4691, VOG4845, VOG5008, VOG9143, VOG1637 |
| JACBGJ010000004.1 | 71046 | 91575 | False | Siphoviridae | VOG9667, VOG0010, VOG9667, VOG4552, VOG4502, VOG9454, VOG0535, VOG0322, VOG6545, VOG0514, VOG4799, VOG0025, VOG4693, VOG5545, VOG0198, VOG8681, VOG0796, VOG10227, VOG0720, VOG4564, VOG4555, VOG4711, VOG3435 |
Phigaro v2.3.0 (Database: Aug. 2017 release)