Probiotic potential risk score
| ARGs (CARD) | VFs (VFDB) | PGs (PHI-base) | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| ARO accession | ARO name | Identity | Coverage | CARD name | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)
ResFinder
| Resistance gene | Identity | Coverage | Phenotype | Accession no. |
|---|---|---|---|---|
| No hit found | ||||
ResFinder v4.0 (Database: resfinder_db, May 2022 release)
AMRFinderPlus
| Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)
Virulence factors
Virulence Factor Database (VFDB)
| Gene ID | Gene name | Identity | Coverage | e-value | VF name | VF category | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)
VirulenceFinder
| Database | Virulence factor | Identity | Coverage | Protein function | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)
Pathogenic genes
PHI-base
| Protein ID | Gene name | Identity | Coverage | e-value | Function | Gene ID |
|---|---|---|---|---|---|---|
| S4E4Q5 | WalR | 80.77 | 99.15 | 1.63e-139 | Transcriptional regulatory protein | EPH95667 |
BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)
Plasmid
PlasmidFinder
| Plasmid | Identity | Query / Template | Accession no. |
|---|---|---|---|
| rep28 | 99.68 | 930 / 930 | CP003162 |
| rep38 | 89.24 | 576 / 903 | CP005943 |
PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)
Prophage
Phigaro
| Scaffold | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CP050541.1 | 383758 | 398084 | False | Siphoviridae | VOG4632, VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204, VOG0198, VOG8908, VOG0480 |
| CP050541.1 | 895848 | 933465 | True | Myoviridae | VOG0861, VOG4705, VOG4845, VOG4691, VOG2349, VOG0573, VOG1348, VOG1433, VOG4865, VOG6163, VOG4699, VOG1352, VOG1883, VOG1353, VOG5795, VOG1329, VOG4564, VOG0720, VOG8453, VOG7407, VOG0611, VOG5088, VOG5088, VOG5343, VOG3691, VOG0198, VOG0044, VOG5088, VOG6005, VOG4693, VOG7236, VOG0186, VOG1309 |
| CP050543.1 | 6487 | 25283 | False | Siphoviridae | VOG1352, VOG1883, VOG1353, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG0045, VOG0198, VOG0149, VOG0052, VOG0189, VOG8647, VOG0514, VOG0226, VOG6394, VOG0283, VOG5039 |
| CP050543.1 | 31763 | 42109 | False | Myoviridae | VOG0985, VOG3349, VOG1637, VOG0703, VOG4687, VOG4845, VOG4691, VOG4550, VOG0573, VOG1348 |
| CP050544.1 | 20619 | 23297 | True | Unknown | VOG5088, VOG0221 |
Phigaro v2.3.0 (Database: Aug. 2017 release)