Probiotic potential risk score
| ARGs (CARD) | VFs (VFDB) | PGs (PHI-base) | PPRS |
|---|---|---|---|
| 1 | 0 | 4 | 4.12 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| ARO accession | ARO name | Identity | Coverage | CARD name | Accession no. |
|---|---|---|---|---|---|
| ARO:3002556 | AAC(6')-Ii | 98.90 | 100.00 | AAC(6')-Ii | L12710.1 |
RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)
ResFinder
| Resistance gene | Identity | Coverage | Phenotype | Accession no. |
|---|---|---|---|---|
| aac(6')-Ii | 98.36 | 100.00 | Warning: gene is missing from Notes file. Please inform curator. | L12710 |
ResFinder v4.0 (Database: resfinder_db, May 2022 release)
AMRFinderPlus
| Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|
| aac(6')-I | aminoglycoside 6'-N-acetyltransferase | EXACTX | 100.00 | 100.00 | WP_002293569.1 |
AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)
Virulence factors
Virulence Factor Database (VFDB)
| Gene ID | Gene name | Identity | Coverage | e-value | VF name | VF category | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)
VirulenceFinder
| Database | Virulence factor | Identity | Coverage | Protein function | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)
Pathogenic genes
PHI-base
| Protein ID | Gene name | Identity | Coverage | e-value | Function | Gene ID |
|---|---|---|---|---|---|---|
| Q836D0 | rnjB | 81.93 | 99.29 | 0.0 | RNase J2 | AAO80984 |
| S4E4Q5 | WalR | 94.44 | 99.57 | 2.76e-164 | Transcriptional regulatory protein | EPH95667 |
| Q82ZX2 | CspR | 89.39 | 98.51 | 4.29e-41 | Cold shock protein | AAO82613 |
| Q3Y1R2 | HMPREF0351_12112 (WxL locusA) | 89.40 | 99.56 | 0.0 | Involved in bile salt stress and endocarditis pathogenesis | HMPREF0351_12112 |
BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)
Plasmid
PlasmidFinder
| Plasmid | Identity | Query / Template | Accession no. |
|---|---|---|---|
| repUS75 | 100.00 | 1059 / 1059 | CP002393 |
PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)
Prophage
Phigaro
| Scaffold | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JADDXY010000010.1 | 198589 | 220709 | False | Siphoviridae | VOG4548, VOG4570, VOG3699, VOG4544, VOG0720, VOG4564, VOG5616, VOG1300, VOG4555, VOG3434, VOG1887, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4605, VOG4599, VOG4705, VOG1637, VOG0703 |
| JADDXY010000003.1 | 4303 | 14117 | False | Unknown | VOG0189, VOG4566, VOG0186, VOG1309, VOG8241, VOG7236, VOG6495, VOG11003, VOG11003, VOG6179, VOG4965, VOG1333, VOG6495 |
| JADDXY010000008.1 | 848962 | 855510 | False | Siphoviridae | VOG0205, VOG4841, VOG4581, VOG4544, VOG5051, VOG4556 |
Phigaro v2.3.0 (Database: Aug. 2017 release)