Probiotic potential risk score
| ARGs (CARD) | VFs (VFDB) | PGs (PHI-base) | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| ARO accession | ARO name | Identity | Coverage | CARD name | Accession no. |
|---|---|---|---|---|---|
| ARO:3004480 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | 92.48 | 100.08 | Bado_rpoB_RIF | NC_008618.1 |
| ARO:3000596 | ErmX | 88.03 | 100.00 | ErmX | M36726.1 |
| ARO:3000596 | ErmX | 87.84 | 89.79 | ErmX | M36726.1 |
| ARO:3000596 | ErmX | 86.97 | 100.00 | ErmX | M36726.1 |
RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)
ResFinder
| Resistance gene | Identity | Coverage | Phenotype | Accession no. |
|---|---|---|---|---|
| erm(X) | 97.77 | 100.00 | Macrolide resistance | X51472 |
ResFinder v4.0 (Database: resfinder_db, May 2022 release)
AMRFinderPlus
| Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|
| erm(X) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(X) | PARTIAL_CONTIG_ENDX | 97.65 | 89.79 | WP_011117480.1 |
| erm(X) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(X) | BLASTX | 97.18 | 100.00 | WP_011117480.1 |
| erm(X) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(X) | BLASTX | 96.13 | 100.00 | WP_011152925.1 |
AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)
Virulence factors
Virulence Factor Database (VFDB)
| Gene ID | Gene name | Identity | Coverage | e-value | VF name | VF category | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)
VirulenceFinder
| Database | Virulence factor | Identity | Coverage | Protein function | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)
Pathogenic genes
PHI-base
| Protein ID | Gene name | Identity | Coverage | e-value | Function | Gene ID |
|---|---|---|---|---|---|---|
| No hit found | ||||||
BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)
Plasmid
PlasmidFinder
| Plasmid | Identity | Query / Template | Accession no. |
|---|---|---|---|
| No hit found | |||
PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)
Prophage
Phigaro
| Scaffold | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JACZEM010000001.1 | 323984 | 333388 | True | Siphoviridae | VOG2842, VOG0945, VOG0944, VOG0275, VOG0275, VOG0275, VOG0944 |
| JACZEM010000001.1 | 467034 | 493026 | False | Siphoviridae | VOG5196, VOG4573, VOG5946, VOG2142, VOG0189, VOG0136, VOG10957, VOG3416, VOG9722, VOG4633, VOG5793, VOG5601, VOG1791, VOG1210, VOG4572, VOG4555, VOG2894, VOG0720, VOG5101 |
| JACZEM010000004.1 | 3256 | 11218 | True | Unknown | VOG0945, VOG0944, VOG0944, VOG5532, VOG0641, VOG9502, VOG8304, VOG0221 |
| JACZEM010000005.1 | 586232 | 613151 | False | Siphoviridae | VOG2038, VOG1154, VOG4544, VOG0720, VOG4576, VOG4555, VOG4553, VOG5504, VOG1581, VOG3409, VOG1159, VOG4621, VOG4557, VOG4582, VOG5793, VOG4569, VOG4599, VOG0933, VOG6301, VOG0979, VOG3298, VOG7888, VOG9502, VOG0731 |
Phigaro v2.3.0 (Database: Aug. 2017 release)