Probiotic potential risk score


ARGs (CARD) VFs (VFDB) PGs (PHI-base) PPRS
0022.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

ARO accession ARO name Identity Coverage CARD name Accession no.
No hit found

RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)

ResFinder

Resistance gene Identity Coverage Phenotype Accession no.
No hit found

ResFinder v4.0 (Database: resfinder_db, May 2022 release)

AMRFinderPlus

Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)

Virulence factors


Virulence Factor Database (VFDB)

Gene ID Gene name Identity Coverage e-value VF name VF category Accession no.
No hit found

BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)

VirulenceFinder

Database Virulence factor Identity Coverage Protein function Accession no.
No hit found

VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)

Pathogenic genes


PHI-base

Protein ID Gene name Identity Coverage e-value Function Gene ID
S4E4Q5WalR85.59100.003.25e-148Transcriptional regulatory proteinEPH95667
Q82ZX2CspR81.8298.512.80e-36Cold shock proteinAAO82613

BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)

Plasmid


PlasmidFinder

Plasmid Identity Query / Template Accession no.
No hit found

PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)

Prophage


Phigaro

Scaffold Begin End Transposable Taxonomy pVOGs
JACJJO010000010.14852861559FalseSiphoviridaeVOG5545, VOG5336, VOG0198, VOG6422, VOG8681, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG9583, VOG0207, VOG4586
JACJJO010000016.1645313406FalseSiphoviridaeVOG11003, VOG1563, VOG0083, VOG0322, VOG7263, VOG5280, VOG5317
JACJJO010000016.11791528839FalseSiphoviridaeVOG0198, VOG8681, VOG3699, VOG4544, VOG0691, VOG0692, VOG4555, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763
JACJJO010000003.1157778187995FalseSiphoviridaeVOG4829, VOG2785, VOG10859, VOG8987, VOG11003, VOG4552, VOG2338, VOG6128, VOG1309, VOG0186, VOG4623, VOG4566, VOG0189, VOG9667, VOG10696, VOG4693, VOG4571, VOG5545, VOG5545, VOG0637, VOG2246, VOG1250, VOG0198, VOG4618, VOG7442, VOG8462, VOG1517, VOG4544, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG0704, VOG0799, VOG0725, VOG0817, VOG6163

Phigaro v2.3.0 (Database: Aug. 2017 release)