Probiotic potential risk score
| ARGs (CARD) | VFs (VFDB) | PGs (PHI-base) | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| ARO accession | ARO name | Identity | Coverage | CARD name | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)
ResFinder
| Resistance gene | Identity | Coverage | Phenotype | Accession no. |
|---|---|---|---|---|
| No hit found | ||||
ResFinder v4.0 (Database: resfinder_db, May 2022 release)
AMRFinderPlus
| Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)
Virulence factors
Virulence Factor Database (VFDB)
| Gene ID | Gene name | Identity | Coverage | e-value | VF name | VF category | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)
VirulenceFinder
| Database | Virulence factor | Identity | Coverage | Protein function | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)
Pathogenic genes
PHI-base
| Protein ID | Gene name | Identity | Coverage | e-value | Function | Gene ID |
|---|---|---|---|---|---|---|
| P0A355 | CspA | 80.30 | 98.51 | 5.68e-36 | Cold shock protein | CAA62903 |
BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)
Plasmid
PlasmidFinder
| Plasmid | Identity | Query / Template | Accession no. |
|---|---|---|---|
| No hit found | |||
PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)
Prophage
Phigaro
| Scaffold | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CP076082.1 | 94730 | 108778 | True | Myoviridae | VOG8916, VOG4737, VOG5088, VOG1355, VOG4624, VOG1292, VOG8916, VOG8916, VOG9967, VOG2406, VOG2352 |
| CP076082.1 | 143077 | 163581 | True | Siphoviridae / Podoviridae | VOG0275, VOG0819, VOG0862, VOG9667, VOG3622, VOG0650, VOG1309, VOG0186, VOG0226, VOG0944, VOG5532, VOG8647, VOG0189, VOG0536, VOG4657, VOG0198, VOG5532, VOG0944, VOG0796, VOG10227 |
| CP076082.1 | 821863 | 851613 | False | Siphoviridae | VOG4615, VOG0703, VOG1637, VOG8438, VOG0459, VOG6307, VOG4633, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1319, VOG10914, VOG4564, VOG0720, VOG10227, VOG0796, VOG5088, VOG0198, VOG4657, VOG4693, VOG8685, VOG0189, VOG4566, VOG0550, VOG0226, VOG0186, VOG1309, VOG2228 |
| CP076082.1 | 1485965 | 1508249 | True | Myoviridae | VOG0189, VOG5235, VOG0083, VOG0382, VOG0384, VOG1026, VOG4357, VOG0205, VOG0226, VOG6085, VOG0025, VOG8295, VOG5088 |
Phigaro v2.3.0 (Database: Aug. 2017 release)