Probiotic potential risk score


ARGs (CARD) VFs (VFDB) PGs (PHI-base) PPRS
5146.48

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

ARO accession ARO name Identity Coverage CARD name Accession no.
ARO:3002623ANT(4')-Ia100.00100.00ANT(4')-IaEF540343.1
ARO:3002816clbC100.00100.00clbCAP006627.1
ARO:3004749BCL-1100.0098.05BCL-1EF540343.1
ARO:3000600Erm(34)96.80100.00Erm(34)AY234334.1
ARO:3004452Alkalihalobacillus clausii chloramphenicol acetyltransferase88.6894.30Acla_ACT_CHLAY238971.1

RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)

ResFinder

Resistance gene Identity Coverage Phenotype Accession no.
ant(4')-Ib100.00100.00Aminoglycoside resistanceAJ506108
cat97.5298.40Phenicol resistanceAY238971
erm(34)95.4799.17Macrolide resistanceAY234334

ResFinder v4.0 (Database: resfinder_db, May 2022 release)

AMRFinderPlus

Gene symbol Sequence name Method Identity Coverage Accession no.
aadD2aminoglycoside O-nucleotidyltransferase ANT(4')-IbEXACTX100.00100.00WP_035202393.1
blaBCL-1class A beta-lactamase BCL-1ALLELEX100.00100.00WP_065825670.1
catAtype A-10 chloramphenicol O-acetyltransferaseEXACTX100.00100.00WP_035203840.1
clbB23S rRNA (adenine(2503)-C(8))-methyltransferase ClbBEXACTX100.00100.00WP_011245929.1
erm(34)23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(34)BLASTX96.80100.00WP_063844504.1
rphCrifamycin-inactivating phosphotransferase RphCBLASTX80.14100.00WP_087347987.1

AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)

Virulence factors


Virulence Factor Database (VFDB)

Gene ID Gene name Identity Coverage e-value VF name VF category Accession no.
VFG016238hlyIII99.69100.000.0Hemolysin IIIExotoxinWP_011247375

BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)

VirulenceFinder

Database Virulence factor Identity Coverage Protein function Accession no.
No hit found

VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)

Pathogenic genes


PHI-base

Protein ID Gene name Identity Coverage e-value Function Gene ID
W8TRT9tufA87.3199.240.0Elongation factor TuAHM69299
Q724L7SpoVG81.4878.646.49e-45RNA-Binding ProteinAAT02994
P0A355CspA86.1597.011.35e-37Cold shock proteinCAA62903
Q2FH36msaB81.2595.522.34e-33Cold shock proteinABD22065

BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)

Plasmid


PlasmidFinder

Plasmid Identity Query / Template Accession no.
No hit found

PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)

Prophage


Phigaro

Scaffold Begin End Transposable Taxonomy pVOGs
JAHLCI010000039.11011630381FalseSiphoviridaeVOG6091, VOG4724, VOG0602, VOG0753, VOG4669, VOG0565, VOG4619, VOG0801, VOG6163, VOG0725, VOG0799, VOG0724, VOG5660, VOG0816, VOG4623, VOG1887, VOG3434, VOG4555

Phigaro v2.3.0 (Database: Aug. 2017 release)