Probiotic potential risk score
| ARGs (CARD) | VFs (VFDB) | PGs (PHI-base) | PPRS |
|---|---|---|---|
| 0 | 0 | 0 | 0.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| ARO accession | ARO name | Identity | Coverage | CARD name | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)
ResFinder
| Resistance gene | Identity | Coverage | Phenotype | Accession no. |
|---|---|---|---|---|
| No hit found | ||||
ResFinder v4.0 (Database: resfinder_db, May 2022 release)
AMRFinderPlus
| Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)
Virulence factors
Virulence Factor Database (VFDB)
| Gene ID | Gene name | Identity | Coverage | e-value | VF name | VF category | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)
VirulenceFinder
| Database | Virulence factor | Identity | Coverage | Protein function | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)
Pathogenic genes
PHI-base
| Protein ID | Gene name | Identity | Coverage | e-value | Function | Gene ID |
|---|---|---|---|---|---|---|
| No hit found | ||||||
BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)
Plasmid
PlasmidFinder
| Plasmid | Identity | Query / Template | Accession no. |
|---|---|---|---|
| ColRNAI | 87.02 | 131 / 130 | DQ298019 |
PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)
Prophage
Phigaro
| Scaffold | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JAHTLW010000002.1 | 1784 | 27180 | False | Siphoviridae | VOG4544, VOG0691, VOG0692, VOG5047, VOG4555, VOG1329, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701, VOG4545, VOG0801, VOG4619, VOG5859, VOG5008, VOG4705, VOG0861, VOG8181, VOG0703, VOG8294 |
| JAHTLW010000002.1 | 322522 | 349597 | False | Siphoviridae | VOG5190, VOG0703, VOG5087, VOG0861, VOG4705, VOG9945, VOG4612, VOG4659, VOG4633, VOG4545, VOG0660, VOG4586, VOG0207, VOG10939, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG0198, VOG6005, VOG0327 |
| JAHTLW010000002.1 | 361253 | 397533 | False | Myoviridae | VOG3685, VOG6422, VOG0275, VOG10934, VOG0703, VOG5087, VOG0861, VOG4705, VOG9945, VOG5763, VOG4862, VOG4691, VOG4550, VOG3894, VOG4885, VOG4865, VOG3636, VOG3892, VOG3891, VOG3890, VOG5612, VOG4870, VOG1900, VOG3888, VOG4623, VOG4572, VOG4555, VOG4564, VOG0720, VOG4544, VOG1517, VOG0590, VOG4618, VOG1345, VOG0198 |
| JAHTLW010000004.1 | 132048 | 158442 | False | Siphoviridae | VOG11003, VOG10043, VOG0052, VOG7438, VOG1047, VOG0021, VOG0026, VOG4606, VOG0327, VOG4548, VOG0198, VOG6154, VOG4581, VOG4055, VOG4571, VOG4544, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG0641 |
Phigaro v2.3.0 (Database: Aug. 2017 release)