Probiotic potential risk score
| ARGs (CARD) | VFs (VFDB) | PGs (PHI-base) | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| ARO accession | ARO name | Identity | Coverage | CARD name | Accession no. |
|---|---|---|---|---|---|
| ARO:3004480 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | 98.48 | 100.00 | Bado_rpoB_RIF | NC_008618.1 |
RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)
ResFinder
| Resistance gene | Identity | Coverage | Phenotype | Accession no. |
|---|---|---|---|---|
| tet(O) | 99.74 | 99.95 | Tetracycline resistance | M18896 |
ResFinder v4.0 (Database: resfinder_db, May 2022 release)
AMRFinderPlus
| Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)
Virulence factors
Virulence Factor Database (VFDB)
| Gene ID | Gene name | Identity | Coverage | e-value | VF name | VF category | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)
VirulenceFinder
| Database | Virulence factor | Identity | Coverage | Protein function | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)
Pathogenic genes
PHI-base
| Protein ID | Gene name | Identity | Coverage | e-value | Function | Gene ID |
|---|---|---|---|---|---|---|
| No hit found | ||||||
BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)
Plasmid
PlasmidFinder
| Plasmid | Identity | Query / Template | Accession no. |
|---|---|---|---|
| No hit found | |||
PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)
Prophage
Phigaro
| Scaffold | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JAHXEK010000017.1 | 41732 | 69551 | False | Siphoviridae | VOG0275, VOG0731, VOG9502, VOG7888, VOG3298, VOG0979, VOG0933, VOG4599, VOG4605, VOG5793, VOG4582, VOG4557, VOG2639, VOG1159, VOG3409, VOG1581, VOG5504, VOG4553, VOG4555, VOG4576, VOG0720, VOG4544, VOG1154, VOG2038 |
| JAHXEK010000027.1 | 2268 | 13719 | False | Siphoviridae | VOG5733, VOG7228, VOG9438, VOG2902, VOG1897, VOG2038, VOG2043, VOG1574, VOG5101, VOG0720, VOG2894, VOG4555, VOG4319 |
| JAHXEK010000007.1 | 426845 | 444303 | False | Siphoviridae | VOG2038, VOG1154, VOG4544, VOG0720, VOG4576, VOG4555, VOG4553, VOG5504, VOG1581, VOG4589, VOG4557, VOG4545, VOG2624, VOG3654 |
Phigaro v2.3.0 (Database: Aug. 2017 release)