Probiotic potential risk score


ARGs (CARD) VFs (VFDB) PGs (PHI-base) PPRS
0011.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

ARO accession ARO name Identity Coverage CARD name Accession no.
No hit found

RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)

ResFinder

Resistance gene Identity Coverage Phenotype Accession no.
No hit found

ResFinder v4.0 (Database: resfinder_db, May 2022 release)

AMRFinderPlus

Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)

Virulence factors


Virulence Factor Database (VFDB)

Gene ID Gene name Identity Coverage e-value VF name VF category Accession no.
No hit found

BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)

VirulenceFinder

Database Virulence factor Identity Coverage Protein function Accession no.
No hit found

VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)

Pathogenic genes


PHI-base

Protein ID Gene name Identity Coverage e-value Function Gene ID
P0A355CspA84.6197.013.59e-36Cold shock proteinCAA62903

BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)

Plasmid


PlasmidFinder

Plasmid Identity Query / Template Accession no.
repUS6785.421008 / 1039CP006012

PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)

Prophage


Phigaro

Scaffold Begin End Transposable Taxonomy pVOGs
JAJGUN010000066.11819736012FalseUnknownVOG6031, VOG6524, VOG6246, VOG1026, VOG6941, VOG6036, VOG7629, VOG7628, VOG5534, VOG6540, VOG10609, VOG9226, VOG0648, VOG0753, VOG0054
JAJGUN010000076.1655037117FalseSiphoviridaeVOG0321, VOG8222, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG3307, VOG1183, VOG7043, VOG3307, VOG0198, VOG0796, VOG10227, VOG0720, VOG4564, VOG7533, VOG4555, VOG1319, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4633, VOG4910, VOG5924, VOG4663, VOG2315, VOG8917
JAJGUN010000083.11709144539FalseSiphoviridaeVOG4010, VOG5280, VOG5317, VOG0686, VOG0198, VOG0866, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568, VOG4553, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG9471, VOG6163, VOG0801, VOG3462, VOG4887

Phigaro v2.3.0 (Database: Aug. 2017 release)