Probiotic potential risk score


ARGs (CARD) VFs (VFDB) PGs (PHI-base) PPRS
0011.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

ARO accession ARO name Identity Coverage CARD name Accession no.
No hit found

RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)

ResFinder

Resistance gene Identity Coverage Phenotype Accession no.
No hit found

ResFinder v4.0 (Database: resfinder_db, May 2022 release)

AMRFinderPlus

Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)

Virulence factors


Virulence Factor Database (VFDB)

Gene ID Gene name Identity Coverage e-value VF name VF category Accession no.
No hit found

BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)

VirulenceFinder

Database Virulence factor Identity Coverage Protein function Accession no.
No hit found

VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)

Pathogenic genes


PHI-base

Protein ID Gene name Identity Coverage e-value Function Gene ID
P0A355CspA83.0897.012.07e-35Cold shock proteinCAA62903

BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)

Plasmid


PlasmidFinder

Plasmid Identity Query / Template Accession no.
No hit found

PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)

Prophage


Phigaro

Scaffold Begin End Transposable Taxonomy pVOGs
JAJGUR010000123.12062544853FalseSiphoviridaeVOG10593, VOG0725, VOG4205, VOG3462, VOG0801, VOG6163, VOG9471, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG4553, VOG4568, VOG4556, VOG0202, VOG4544, VOG4581, VOG4841, VOG0866, VOG10604, VOG0198
JAJGUR010000129.12840949931FalseSiphoviridaeVOG0641, VOG5008, VOG3462, VOG0801, VOG4545, VOG0725, VOG0799, VOG0724, VOG1353, VOG4713, VOG1329, VOG1300, VOG4564, VOG0720, VOG10227, VOG0611, VOG4618
JAJGUR010000129.16145465027FalseSiphoviridaeVOG4566, VOG0514, VOG6545, VOG0322, VOG0535
JAJGUR010000132.16072864513FalseSiphoviridaeVOG11003, VOG0535, VOG0322, VOG6545, VOG0514
JAJGUR010000132.17603697029FalseSiphoviridaeVOG4618, VOG0611, VOG10227, VOG0720, VOG4564, VOG1300, VOG1329, VOG4713, VOG1353, VOG0724, VOG0799, VOG0725, VOG4545, VOG0801, VOG3462, VOG5008
JAJGUR010000020.1504135041FalseSiphoviridaeVOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG8916, VOG1183, VOG7043, VOG3307, VOG0198, VOG0796, VOG10227, VOG0720, VOG4564, VOG5697, VOG7533, VOG10914, VOG1319, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG0727, VOG4599, VOG5007, VOG0648

Phigaro v2.3.0 (Database: Aug. 2017 release)