Probiotic potential risk score


ARGs (CARD) VFs (VFDB) PGs (PHI-base) PPRS
1011.41

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

ARO accession ARO name Identity Coverage CARD name Accession no.
ARO:3002835lnuA97.52100.00lnuAM14039.1

RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)

ResFinder

Resistance gene Identity Coverage Phenotype Accession no.
lnu(A)98.56100.00Lincosamide resistanceM14039

ResFinder v4.0 (Database: resfinder_db, May 2022 release)

AMRFinderPlus

Gene symbol Sequence name Method Identity Coverage Accession no.
lnu(A)lincosamide nucleotidyltransferase Lnu(A)EXACTX100.00100.00WP_001829870.1

AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)

Virulence factors


Virulence Factor Database (VFDB)

Gene ID Gene name Identity Coverage e-value VF name VF category Accession no.
No hit found

BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)

VirulenceFinder

Database Virulence factor Identity Coverage Protein function Accession no.
No hit found

VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)

Pathogenic genes


PHI-base

Protein ID Gene name Identity Coverage e-value Function Gene ID
P0A355CspA83.0897.011.81e-35Cold shock proteinCAA62903

BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)

Plasmid


PlasmidFinder

Plasmid Identity Query / Template Accession no.
No hit found

PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)

Prophage


Phigaro

Scaffold Begin End Transposable Taxonomy pVOGs
JAJGVX010000245.127019981FalseSiphoviridaeVOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG0641, VOG9502
JAJGVX010000277.1176419191TrueSiphoviridaeVOG4548, VOG0198, VOG6154, VOG4581, VOG4571, VOG4544, VOG6875, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG0641, VOG0221, VOG0221, VOG0221
JAJGVX010000286.11586523748FalseMyoviridaeVOG0083, VOG0382, VOG0384, VOG10104, VOG0226
JAJGVX010000290.11340314388FalseUnknownVOG4552
JAJGVX010000290.13023255359FalseSiphoviridaeVOG8294, VOG0703, VOG8917, VOG4705, VOG8438, VOG1975, VOG3462, VOG0801, VOG6163, VOG9471, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG4553, VOG4568, VOG4556, VOG4544, VOG4581, VOG4841, VOG0866, VOG9331, VOG0866

Phigaro v2.3.0 (Database: Aug. 2017 release)