Probiotic potential risk score
| ARGs (CARD) | VFs (VFDB) | PGs (PHI-base) | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| ARO accession | ARO name | Identity | Coverage | CARD name | Accession no. |
|---|---|---|---|---|---|
| ARO:3000979 | TEM-116 | 100.00 | 100.00 | TEM-116 | U36911.1 |
| ARO:3003730 | Bifidobacterium bifidum ileS conferring resistance to mupirocin | 99.46 | 100.09 | Bbif_ileS_MUP | CP001840.1 |
| ARO:3004480 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | 91.22 | 102.02 | Bado_rpoB_RIF | NC_008618.1 |
RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)
ResFinder
| Resistance gene | Identity | Coverage | Phenotype | Accession no. |
|---|---|---|---|---|
| blaTEM-116 | 100.00 | 100.00 | Beta-lactam resistance | AY425988 |
ResFinder v4.0 (Database: resfinder_db, May 2022 release)
AMRFinderPlus
| Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|
| blaTEM-116 | broad-spectrum class A beta-lactamase TEM-116 | ALLELEX | 100.00 | 100.00 | WP_000027050.1 |
AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)
Virulence factors
Virulence Factor Database (VFDB)
| Gene ID | Gene name | Identity | Coverage | e-value | VF name | VF category | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)
VirulenceFinder
| Database | Virulence factor | Identity | Coverage | Protein function | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)
Pathogenic genes
PHI-base
| Protein ID | Gene name | Identity | Coverage | e-value | Function | Gene ID |
|---|---|---|---|---|---|---|
| No hit found | ||||||
BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)
Plasmid
PlasmidFinder
| Plasmid | Identity | Query / Template | Accession no. |
|---|---|---|---|
| ColRNAI | 87.02 | 131 / 130 | DQ298019 |
PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)
Prophage
Phigaro
| Scaffold | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JAJHZI010000001.1 | 184922 | 214421 | True | Siphoviridae | VOG5088, VOG2537, VOG2534, VOG2534, VOG1243, VOG7108, VOG4602, VOG0275, VOG1154, VOG4544, VOG0720, VOG0720, VOG6302, VOG4555, VOG4553, VOG1523, VOG1581, VOG3409, VOG4557, VOG4582, VOG4545, VOG4633, VOG4599, VOG10899, VOG4824 |
| JAJHZI010000001.1 | 1270711 | 1286311 | False | Siphoviridae | VOG5395, VOG4602, VOG0010, VOG3304, VOG0585, VOG11075, VOG2090, VOG8440, VOG0275 |
| JAJHZI010000001.1 | 1364309 | 1384921 | False | Myoviridae | VOG0384, VOG4548, VOG11016, VOG5689, VOG0382, VOG0052, VOG8190, VOG2090 |
Phigaro v2.3.0 (Database: Aug. 2017 release)