Probiotic potential risk score
| ARGs (CARD) | VFs (VFDB) | PGs (PHI-base) | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| ARO accession | ARO name | Identity | Coverage | CARD name | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)
ResFinder
| Resistance gene | Identity | Coverage | Phenotype | Accession no. |
|---|---|---|---|---|
| ClpL | 98.11 | 100.00 | Disinfectant resistance | CP023753 |
ResFinder v4.0 (Database: resfinder_db, May 2022 release)
AMRFinderPlus
| Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)
Virulence factors
Virulence Factor Database (VFDB)
| Gene ID | Gene name | Identity | Coverage | e-value | VF name | VF category | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)
VirulenceFinder
| Database | Virulence factor | Identity | Coverage | Protein function | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)
Pathogenic genes
PHI-base
| Protein ID | Gene name | Identity | Coverage | e-value | Function | Gene ID |
|---|---|---|---|---|---|---|
| S4E4Q5 | WalR | 84.25 | 99.57 | 2.33e-146 | Transcriptional regulatory protein | EPH95667 |
| Q82ZX2 | CspR | 84.61 | 97.01 | 3.71e-37 | Cold shock protein | AAO82613 |
BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)
Plasmid
PlasmidFinder
| Plasmid | Identity | Query / Template | Accession no. |
|---|---|---|---|
| rep38 | 99.00 | 903 / 903 | CP005943 |
| rep28 | 98.17 | 930 / 930 | CP003162 |
PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)
Prophage
Phigaro
| Scaffold | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CP086412.1 | 40340 | 50410 | False | Siphoviridae | VOG4632, VOG4609, VOG6414, VOG0205, VOG4841, VOG4581, VOG4544, VOG4556, VOG4553 |
| CP086412.1 | 798383 | 800777 | False | Unknown | VOG9312, VOG9312 |
| CP086412.1 | 1218834 | 1231414 | False | Siphoviridae | VOG0348, VOG9326, VOG4602, VOG8520, VOG1563, VOG8222, VOG0181, VOG8925, VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327 |
| CP086412.1 | 1234893 | 1258850 | False | Siphoviridae | VOG6154, VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4619, VOG3498, VOG9997, VOG8917, VOG9888, VOG0602, VOG8294, VOG1191 |
| CP086412.1 | 1852993 | 1878467 | False | Siphoviridae | VOG9998, VOG8870, VOG10957, VOG4599, VOG4605, VOG5904, VOG0660, VOG0209, VOG4586, VOG0207, VOG8239, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG7810, VOG0741, VOG4841, VOG0198, VOG6005 |
Phigaro v2.3.0 (Database: Aug. 2017 release)