Probiotic potential risk score


ARGs (CARD) VFs (VFDB) PGs (PHI-base) PPRS
0000.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

ARO accession ARO name Identity Coverage CARD name Accession no.
No hit found

RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)

ResFinder

Resistance gene Identity Coverage Phenotype Accession no.
No hit found

ResFinder v4.0 (Database: resfinder_db, May 2022 release)

AMRFinderPlus

Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)

Virulence factors


Virulence Factor Database (VFDB)

Gene ID Gene name Identity Coverage e-value VF name VF category Accession no.
No hit found

BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)

VirulenceFinder

Database Virulence factor Identity Coverage Protein function Accession no.
No hit found

VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)

Pathogenic genes


PHI-base

Protein ID Gene name Identity Coverage e-value Function Gene ID
No hit found

BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)

Plasmid


PlasmidFinder

Plasmid Identity Query / Template Accession no.
No hit found

PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)

Prophage


Phigaro

Scaffold Begin End Transposable Taxonomy pVOGs
JAIQXC010000001.1447481477330FalseSiphoviridaeVOG8294, VOG0703, VOG0686, VOG9888, VOG0861, VOG5008, VOG7906, VOG6163, VOG4633, VOG0800, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG10914, VOG4564, VOG0720, VOG10227, VOG0796, VOG10142, VOG0198, VOG4693, VOG5880, VOG0189, VOG4566
JAIQXC010000004.13620647706FalseSiphoviridaeVOG0322, VOG7442, VOG4890, VOG4603, VOG6513, VOG6585, VOG0275

Phigaro v2.3.0 (Database: Aug. 2017 release)