Probiotic potential risk score
| ARGs (CARD) | VFs (VFDB) | PGs (PHI-base) | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| ARO accession | ARO name | Identity | Coverage | CARD name | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)
ResFinder
| Resistance gene | Identity | Coverage | Phenotype | Accession no. |
|---|---|---|---|---|
| No hit found | ||||
ResFinder v4.0 (Database: resfinder_db, May 2022 release)
AMRFinderPlus
| Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)
Virulence factors
Virulence Factor Database (VFDB)
| Gene ID | Gene name | Identity | Coverage | e-value | VF name | VF category | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)
VirulenceFinder
| Database | Virulence factor | Identity | Coverage | Protein function | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)
Pathogenic genes
PHI-base
| Protein ID | Gene name | Identity | Coverage | e-value | Function | Gene ID |
|---|---|---|---|---|---|---|
| P0A355 | CspA | 86.36 | 98.51 | 4.24e-37 | Cold shock protein | CAA62903 |
BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)
Plasmid
PlasmidFinder
| Plasmid | Identity | Query / Template | Accession no. |
|---|---|---|---|
| No hit found | |||
PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)
Prophage
Phigaro
| Scaffold | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CP091132.1 | 699824 | 714221 | False | Myoviridae | VOG8295, VOG0025, VOG6085, VOG0226, VOG0205, VOG0384, VOG0382, VOG0083 |
| CP091132.1 | 844177 | 865312 | False | Siphoviridae | VOG0221, VOG9502, VOG0641, VOG4589, VOG0204, VOG4553, VOG4573, VOG4556, VOG4544, VOG4571, VOG4581, VOG6154, VOG0198, VOG4548, VOG0327, VOG4606, VOG0026, VOG0021, VOG1047 |
| CP091132.1 | 917230 | 947326 | False | Siphoviridae | VOG0641, VOG0648, VOG4599, VOG0727, VOG4545, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1319, VOG10914, VOG4564, VOG0720, VOG10227, VOG0796, VOG1315, VOG0198, VOG0536, VOG0189, VOG4566, VOG0550, VOG0226, VOG0186, VOG1309, VOG2228, VOG0650, VOG9667, VOG7298, VOG0862, VOG0819 |
| CP091132.1 | 1970232 | 1985197 | True | Siphoviridae | VOG1724, VOG1026, VOG1026, VOG5088, VOG5088, VOG0944, VOG8387, VOG5543, VOG5088, VOG5532 |
Phigaro v2.3.0 (Database: Aug. 2017 release)