Probiotic potential risk score

ARGs (CARD)	VFs (VFDB)	PGs (PHI-base)	PPRS
0	0	2	2.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes

Comprehensive Antibiotic Resistance Database (CARD)

ARO accession	ARO name	Identity	Coverage	CARD name	Accession no.
No hit found

RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)

ResFinder

Resistance gene	Identity	Coverage	Phenotype	Accession no.
No hit found

ResFinder v4.0 (Database: resfinder_db, May 2022 release)

AMRFinderPlus

Gene symbol	Sequence name	Method	Identity	Coverage	Accession no.
No hit found

AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)

Virulence factors

Virulence Factor Database (VFDB)

Gene ID	Gene name	Identity	Coverage	e-value	VF name	VF category	Accession no.
No hit found

BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)

VirulenceFinder

Database	Virulence factor	Identity	Coverage	Protein function	Accession no.
No hit found

VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)

Pathogenic genes

PHI-base

Protein ID	Gene name	Identity	Coverage	e-value	Function	Gene ID
S4E4Q5	WalR	84.25	99.57	2.31e-144	Transcriptional regulatory protein	EPH95667
Q82ZX2	CspR	89.39	98.51	4.43e-41	Cold shock protein	AAO82613

BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)

Plasmid

PlasmidFinder

Plasmid	Identity	Query / Template	Accession no.
repUS74	93.41	1063 / 1062	CP000424

PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)

Prophage

Phigaro

Scaffold	Begin	End	Transposable	Taxonomy	pVOGs
JAJGOQ010000001.1	36399	46359	False	Siphoviridae	VOG0536, VOG9860, VOG7018, VOG0189, VOG4566, VOG0226, VOG0514, VOG0283, VOG0685, VOG3642, VOG4967, VOG10867, VOG0181, VOG4552, VOG3622, VOG6495
JAJGOQ010000001.1	64062	102807	False	Siphoviridae	VOG0249, VOG4918, VOG0703, VOG7017, VOG0861, VOG6455, VOG4599, VOG4605, VOG6163, VOG5852, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844, VOG4549, VOG10904, VOG4570, VOG6579, VOG0198, VOG1563, VOG0044, VOG3643, VOG0152, VOG4643, VOG0275, VOG0195, VOG4693, VOG6623, VOG9860, VOG0189, VOG4566, VOG0226, VOG0322, VOG9667, VOG0321, VOG3642, VOG4967, VOG10867, VOG0181, VOG3459, VOG3711, VOG4552, VOG5353, VOG8520, VOG0862
JAJGOQ010000001.1	1729671	1747945	True	Unknown	VOG3624, VOG0221, VOG8916, VOG8916, VOG4829, VOG8916, VOG4813, VOG5532, VOG3624, VOG5088
JAJGOQ010000001.1	2018791	2058437	False	Siphoviridae	VOG3304, VOG0862, VOG8520, VOG4552, VOG0181, VOG10867, VOG4967, VOG3642, VOG0685, VOG0283, VOG0514, VOG0226, VOG4566, VOG0189, VOG7018, VOG9860, VOG0536, VOG0195, VOG0275, VOG4643, VOG0152, VOG2338, VOG0198, VOG4570, VOG10904, VOG4549, VOG4841, VOG4581, VOG1886, VOG5051, VOG4556, VOG4573, VOG4553, VOG9975, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599, VOG5088, VOG4599, VOG6455, VOG7896, VOG0861, VOG7017, VOG0703, VOG4918
JAJGOQ010000001.1	2296004	2333705	False	Siphoviridae	VOG6914, VOG5539, VOG0862, VOG8520, VOG5353, VOG4552, VOG0181, VOG10867, VOG4967, VOG3642, VOG0685, VOG0283, VOG0514, VOG0226, VOG4799, VOG0025, VOG7735, VOG7018, VOG0536, VOG4571, VOG0152, VOG3643, VOG0044, VOG1563, VOG0198, VOG4570, VOG10904, VOG4549, VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG5852, VOG6163, VOG4605, VOG4599, VOG6455, VOG7896, VOG0861, VOG7017, VOG0703, VOG4918
JAJGOQ010000001.1	2794362	2832409	False	Siphoviridae	VOG4605, VOG4918, VOG0703, VOG7017, VOG0861, VOG7896, VOG6455, VOG4599, VOG4605, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG4544, VOG0796, VOG4549, VOG4570, VOG3477, VOG0198, VOG2338, VOG0044, VOG3643, VOG0673, VOG2820, VOG4643, VOG0275, VOG0195, VOG0536, VOG9860, VOG0189, VOG4566, VOG0186, VOG1309, VOG8241
JAJGOQ010000001.1	3094977	3121240	True	Siphoviridae	VOG0536, VOG9860, VOG7018, VOG0189, VOG4566, VOG0226, VOG0514, VOG0283, VOG0685, VOG3642, VOG4967, VOG10867, VOG0181, VOG4552, VOG8520, VOG0862, VOG3304, VOG5944, VOG0275, VOG8916, VOG4918, VOG0703, VOG7017, VOG0861, VOG7896, VOG6455, VOG4599, VOG5088, VOG4599, VOG4605, VOG6163, VOG0660

Phigaro v2.3.0 (Database: Aug. 2017 release)