Probiotic potential risk score
| ARGs (CARD) | VFs (VFDB) | PGs (PHI-base) | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| ARO accession | ARO name | Identity | Coverage | CARD name | Accession no. |
|---|---|---|---|---|---|
| ARO:3004480 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | 98.15 | 100.00 | Bado_rpoB_RIF | NC_008618.1 |
| ARO:3002671 | Limosilactobacillus reuteri cat-TC | 98.05 | 90.76 | Lreu_cat-TC | U75299.1 |
| ARO:3000596 | ErmX | 89.44 | 100.00 | ErmX | M36726.1 |
RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)
ResFinder
| Resistance gene | Identity | Coverage | Phenotype | Accession no. |
|---|---|---|---|---|
| cat(pC194) | 99.69 | 100.00 | Phenicol resistance | NC_002013 |
| erm(X) | 99.48 | 100.00 | Macrolide resistance | U21300 |
ResFinder v4.0 (Database: resfinder_db, May 2022 release)
AMRFinderPlus
| Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|
| erm(X) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(X) | BLASTX | 98.94 | 100.00 | WP_011117480.1 |
| cat-TC | type A-9 chloramphenicol O-acetyltransferase Cat-TC | INTERNAL_STOP | 91.21 | 100.00 | WP_032488880.1 |
AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)
Virulence factors
Virulence Factor Database (VFDB)
| Gene ID | Gene name | Identity | Coverage | e-value | VF name | VF category | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)
VirulenceFinder
| Database | Virulence factor | Identity | Coverage | Protein function | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)
Pathogenic genes
PHI-base
| Protein ID | Gene name | Identity | Coverage | e-value | Function | Gene ID |
|---|---|---|---|---|---|---|
| No hit found | ||||||
BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)
Plasmid
PlasmidFinder
| Plasmid | Identity | Query / Template | Accession no. |
|---|---|---|---|
| No hit found | |||
PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)
Prophage
Phigaro
| Scaffold | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CABHNQ010000035.1 | 6889 | 41269 | False | Siphoviridae | VOG4841, VOG6459, VOG1574, VOG5101, VOG0720, VOG2806, VOG9853, VOG3434, VOG1887, VOG5036, VOG4557, VOG8691, VOG3415, VOG9722, VOG3416, VOG10972, VOG0979, VOG3298, VOG9502, VOG0731 |
| CABHNQ010000057.1 | 27728 | 33371 | False | Siphoviridae | VOG4559, VOG7215, VOG4632, VOG2537 |
Phigaro v2.3.0 (Database: Aug. 2017 release)