Probiotic potential risk score
| ARGs (CARD) | VFs (VFDB) | PGs (PHI-base) | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| ARO accession | ARO name | Identity | Coverage | CARD name | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)
ResFinder
| Resistance gene | Identity | Coverage | Phenotype | Accession no. |
|---|---|---|---|---|
| ClpL | 98.11 | 100.00 | Disinfectant resistance | CP023753 |
ResFinder v4.0 (Database: resfinder_db, May 2022 release)
AMRFinderPlus
| Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)
Virulence factors
Virulence Factor Database (VFDB)
| Gene ID | Gene name | Identity | Coverage | e-value | VF name | VF category | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)
VirulenceFinder
| Database | Virulence factor | Identity | Coverage | Protein function | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)
Pathogenic genes
PHI-base
| Protein ID | Gene name | Identity | Coverage | e-value | Function | Gene ID |
|---|---|---|---|---|---|---|
| S4E4Q5 | WalR | 84.25 | 99.57 | 2.33e-146 | Transcriptional regulatory protein | EPH95667 |
| Q82ZX2 | CspR | 84.61 | 97.01 | 3.70e-37 | Cold shock protein | AAO82613 |
BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)
Plasmid
PlasmidFinder
| Plasmid | Identity | Query / Template | Accession no. |
|---|---|---|---|
| No hit found | |||
PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)
Prophage
Phigaro
| Scaffold | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CABMJP010000001.1 | 1205269 | 1210764 | False | Siphoviridae | VOG2703, VOG1309, VOG0186, VOG4566, VOG4693 |
| CABMJP010000001.1 | 1211454 | 1234592 | False | Siphoviridae | VOG4571, VOG7529, VOG0044, VOG3643, VOG0198, VOG1714, VOG0638, VOG0796, VOG10227, VOG0720, VOG4564, VOG4555, VOG0694, VOG4713, VOG1320, VOG5660, VOG1321, VOG0799, VOG0725, VOG1323, VOG0801, VOG4619, VOG4619, VOG4856 |
| CABMJP010000001.1 | 1263650 | 1269155 | False | Siphoviridae | VOG11003, VOG6495, VOG0181, VOG7298, VOG1309, VOG0186, VOG4566 |
| CABMJP010000001.1 | 1273949 | 1301569 | False | Siphoviridae | VOG5709, VOG0796, VOG4544, VOG0720, VOG7038, VOG4564, VOG10914, VOG3434, VOG1887, VOG4713, VOG1330, VOG0704, VOG4634, VOG1333, VOG4545, VOG1335, VOG10608, VOG3498, VOG8294, VOG1637 |
| CABMJP010000001.1 | 2612986 | 2615385 | False | Siphoviridae | VOG4602, VOG9312 |
Phigaro v2.3.0 (Database: Aug. 2017 release)