Probiotic potential risk score


ARGs (CARD) VFs (VFDB) PGs (PHI-base) PPRS
910916.19

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

ARO accession ARO name Identity Coverage CARD name Accession no.
ARO:3003063ykkC100.00100.00ykkCAL009126.1
ARO:3003324Bacillus subtilis mprF99.77100.00Bsub_mprFAL009126.3
ARO:3003006blt99.75100.00bltL32599.1
ARO:3003007bmr99.74100.00bmrM33768.1
ARO:3002813lmrB99.16100.42lmrBJYFL01000006.1
ARO:3003064ykkD99.05100.00ykkDAL009126.1
ARO:3004476vmlR98.35100.00vmlRNC_000964.3
ARO:3004541mphK97.71100.00mphKCP010314.1
ARO:3002627aadK97.54100.00aadKAL009126.1

RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)

ResFinder

Resistance gene Identity Coverage Phenotype Accession no.
tet(L)100.00100.00Tetracycline resistanceX08034
aadK98.4899.77Aminoglycoside resistanceM26879
mph(K)97.50100.00Warning: gene is missing from Notes file. Please inform curator.NC_000964

ResFinder v4.0 (Database: resfinder_db, May 2022 release)

AMRFinderPlus

Gene symbol Sequence name Method Identity Coverage Accession no.
tet(L)tetracycline efflux MFS transporter Tet(L)EXACTX100.00100.00WP_003242953.1
vmlRABC-F type ribosomal protection protein VmlRBLASTX98.35100.00WP_003234144.1
mphKmacrolide 2'-phosphotransferase MphKBLASTX97.71100.00WP_003246254.1
aadKaminoglycoside 6-adenylyltransferase AadKBLASTX97.54100.00WP_003229862.1
satAstreptothricin N-acetyltransferase SatABLASTX89.60100.00WP_003242546.1
rphCrifamycin-inactivating phosphotransferase RphCBLASTX81.40100.00WP_087347987.1

AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)

Virulence factors


Virulence Factor Database (VFDB)

BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)

VirulenceFinder

Database Virulence factor Identity Coverage Protein function Accession no.
No hit found

VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)

Pathogenic genes


PHI-base

Protein ID Gene name Identity Coverage e-value Function Gene ID
W8TRT9tufA85.0399.240.0Elongation factor TuAHM69299
B3GXB6pdxS83.7997.970.0Encodes the putative pyridoxal 5�-phosphate synthase subunit PdxSACE61268
B7HLG1CodY81.0899.625.88e-148Nutrient-responsive regulatorACJ80679
P63786ClpP81.0596.941.67e-114Part of proteolytic complexBAB94595
Q9RGX0spxA183.9799.249.51e-83Redox-responsive transcription factorAAF21893
Q724L7SpoVG82.7278.642.44e-47RNA-Binding ProteinAAT02994
P0A355CspA90.9198.518.07e-40Cold shock proteinCAA62903
Q92AD0CspD81.5497.012.10e-36Cold shock proteinCAC99957
P0A357CspB83.0897.013.09e-34Cold shock proteinCAD00094

BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)

Plasmid


PlasmidFinder

Plasmid Identity Query / Template Accession no.
Col(SD853)86.90168 / 194NC015392

PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)

Prophage


Phigaro

Scaffold Begin End Transposable Taxonomy pVOGs
CAJNPR010000001.1316810348653FalseSiphoviridaeVOG4606, VOG2752, VOG10041, VOG0822, VOG0044, VOG0044, VOG0198, VOG0376, VOG2545, VOG0531, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568, VOG4553, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4619, VOG4626, VOG4612, VOG3390, VOG4705, VOG0641, VOG4574
CAJNPR010000001.1536076555303FalseMyoviridaeVOG4685, VOG0749, VOG4589, VOG4870, VOG10055, VOG3890, VOG3891, VOG3892, VOG6163, VOG4865, VOG10095, VOG4885, VOG3894, VOG4550, VOG4691, VOG4862, VOG7718
CAJNPR010000002.1370390397891FalseMyoviridaeVOG4602, VOG9667, VOG3490, VOG0189, VOG4861, VOG5447, VOG0796, VOG10227, VOG4773, VOG4685, VOG0749, VOG3890, VOG3891, VOG3892, VOG6163, VOG4865, VOG4885, VOG3894, VOG4550, VOG4691, VOG4862, VOG7718, VOG4705
CAJNPR010000008.12171635442FalseUnknownVOG0052, VOG11080, VOG2352, VOG0397, VOG1198, VOG4561, VOG4714, VOG2352, VOG3851, VOG3531, VOG2725, VOG4549
CAJNPR010000008.16242282952FalseSiphoviridaeVOG0221, VOG4581, VOG4544, VOG4556, VOG4568, VOG4553, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG5852, VOG6163, VOG4605

Phigaro v2.3.0 (Database: Aug. 2017 release)