| ORF_ID | e_value | Gene_name | EC_number | CAZy | COGs | Description |
|---|---|---|---|---|---|---|
| PAPOILPD_00002 | 0.0 | traI | 5.99.1.2 | L | This gene contains a nucleotide ambiguity which may be the result of a sequencing error | |
| PAPOILPD_00003 | 6.4e-289 | S | SH3-like domain | |||
| PAPOILPD_00004 | 2.2e-27 | XK27_05520 | S | Uncharacterized protein conserved in bacteria (DUF2087) | ||
| PAPOILPD_00005 | 2.2e-82 | purE | 5.4.99.18 | F | Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) | |
| PAPOILPD_00006 | 2e-208 | purK | 6.3.4.18 | F | Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR) | |
| PAPOILPD_00007 | 4.4e-252 | purB | 4.3.2.2 | F | Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily | |
| PAPOILPD_00008 | 1.6e-134 | purC | 4.1.1.21, 4.3.2.2, 6.3.2.6 | F | Belongs to the SAICAR synthetase family | |
| PAPOILPD_00009 | 2.8e-38 | purS | 6.3.2.6, 6.3.5.3 | F | Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL | |
| PAPOILPD_00010 | 5.2e-127 | purQ | 6.3.5.3 | F | Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL | |
| PAPOILPD_00011 | 0.0 | purL | 6.3.5.3 | F | Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL | |
| PAPOILPD_00012 | 1.5e-280 | purF | 2.4.2.14 | F | Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine | |
| PAPOILPD_00013 | 5.1e-198 | purM | 6.3.3.1, 6.3.4.13 | F | Phosphoribosylformylglycinamidine cyclo-ligase | |
| PAPOILPD_00014 | 7.1e-109 | purN | 2.1.2.2 | F | Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate | |
| PAPOILPD_00015 | 1.8e-292 | purH | 2.1.2.3, 3.5.4.10 | F | Bifunctional purine biosynthesis protein PurH | |
| PAPOILPD_00016 | 4.2e-239 | purD | 6.3.4.13 | F | Belongs to the GARS family | |
| PAPOILPD_00017 | 1.6e-08 | livF | E | ABC transporter | ||
| PAPOILPD_00018 | 6.8e-35 | livF | E | ABC transporter | ||
| PAPOILPD_00019 | 2.6e-89 | metB | 2.5.1.48, 4.4.1.8 | E | Cys/Met metabolism PLP-dependent enzyme | |
| PAPOILPD_00020 | 3.9e-65 | arsC | 1.20.4.1 | P | Belongs to the ArsC family | |
| PAPOILPD_00021 | 6.4e-48 | rplU | J | This protein binds to 23S rRNA in the presence of protein L20 | ||
| PAPOILPD_00022 | 1.6e-48 | rpmA | J | Belongs to the bacterial ribosomal protein bL27 family | ||
| PAPOILPD_00023 | 2.1e-194 | pepP | 3.4.11.9, 3.4.13.9 | E | Creatinase/Prolidase N-terminal domain | |
| PAPOILPD_00024 | 4.5e-100 | efp | J | Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase | ||
| PAPOILPD_00025 | 5.8e-71 | yqhY | S | Asp23 family, cell envelope-related function | ||
| PAPOILPD_00026 | 1.5e-65 | nusB | K | Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons | ||
| PAPOILPD_00027 | 4.3e-155 | folD | 1.5.1.5, 3.5.4.9 | F | Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate | |
| PAPOILPD_00028 | 7.3e-245 | xseA | 3.1.11.6 | L | Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides | |
| PAPOILPD_00029 | 1.7e-32 | xseB | 3.1.11.6 | L | Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides | |
| PAPOILPD_00030 | 3.8e-159 | ispA | 2.5.1.1, 2.5.1.10, 2.5.1.29, 2.5.1.90 | H | Belongs to the FPP GGPP synthase family | |
| PAPOILPD_00031 | 3.6e-151 | rrmJ | 2.1.1.226, 2.1.1.227 | J | Ribosomal RNA large subunit methyltransferase J | |
| PAPOILPD_00032 | 1e-301 | recN | L | May be involved in recombinational repair of damaged DNA | ||
| PAPOILPD_00033 | 4.2e-43 | oppA | E | transmembrane transport | ||
| PAPOILPD_00034 | 1.5e-45 | oppA | E | ABC transporter, substratebinding protein | ||
| PAPOILPD_00035 | 1.7e-48 | |||||
| PAPOILPD_00036 | 4e-110 | gmk | 2.7.4.8, 4.1.1.23 | F | Essential for recycling GMP and indirectly, cGMP | |
| PAPOILPD_00037 | 4.2e-33 | rpoZ | 2.7.7.6 | K | Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits | |
| PAPOILPD_00038 | 0.0 | priA | L | Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA | ||
| PAPOILPD_00039 | 7.4e-172 | fmt | 2.1.2.9 | J | Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus | |
| PAPOILPD_00040 | 9.4e-242 | sun | 2.1.1.176 | J | Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA | |
| PAPOILPD_00041 | 1.4e-136 | stp | 3.1.3.16 | T | phosphatase | |
| PAPOILPD_00042 | 0.0 | KLT | serine threonine protein kinase | |||
| PAPOILPD_00043 | 4.5e-163 | rsgA | 3.1.3.100 | S | One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit | |
| PAPOILPD_00044 | 1.5e-126 | thiN | 2.7.6.2 | H | thiamine pyrophosphokinase | |
| PAPOILPD_00048 | 1.7e-114 | V | ABC transporter transmembrane region | |||
| PAPOILPD_00049 | 6.4e-117 | V | ABC transporter transmembrane region | |||
| PAPOILPD_00050 | 3.2e-26 | rpmB | J | Belongs to the bacterial ribosomal protein bL28 family | ||
| PAPOILPD_00051 | 8.8e-57 | asp | S | Asp23 family, cell envelope-related function | ||
| PAPOILPD_00052 | 2.2e-272 | yloV | S | DAK2 domain fusion protein YloV | ||
| PAPOILPD_00053 | 0.0 | recG | 3.6.4.12 | L | Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) | |
| PAPOILPD_00054 | 4.2e-178 | plsX | 2.3.1.15 | I | Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA | |
| PAPOILPD_00055 | 8.3e-35 | acpP | IQ | Carrier of the growing fatty acid chain in fatty acid biosynthesis | ||
| PAPOILPD_00056 | 3.2e-189 | oppD | P | Belongs to the ABC transporter superfamily | ||
| PAPOILPD_00057 | 2e-177 | oppF | P | Belongs to the ABC transporter superfamily | ||
| PAPOILPD_00058 | 1.6e-174 | oppB | P | ABC transporter permease | ||
| PAPOILPD_00059 | 4.6e-155 | oppC | P | Binding-protein-dependent transport system inner membrane component | ||
| PAPOILPD_00060 | 0.0 | oppA1 | E | ABC transporter substrate-binding protein | ||
| PAPOILPD_00061 | 0.0 | oppA | E | ABC transporter substrate-binding protein | ||
| PAPOILPD_00062 | 4.5e-126 | rnc | 3.1.26.3 | J | Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism | |
| PAPOILPD_00063 | 0.0 | smc | D | Required for chromosome condensation and partitioning | ||
| PAPOILPD_00064 | 8.5e-155 | ftsY | U | Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC) | ||
| PAPOILPD_00065 | 5.9e-25 | pipD | E | Dipeptidase | ||
| PAPOILPD_00066 | 1.1e-51 | ylxM | S | Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY ffh. May be a regulatory protein | ||
| PAPOILPD_00067 | 1.4e-243 | ffh | 3.6.5.4 | U | Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY | |
| PAPOILPD_00068 | 2.9e-44 | rpsP | J | Belongs to the bacterial ribosomal protein bS16 family | ||
| PAPOILPD_00069 | 6.9e-92 | rimM | J | An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes | ||
| PAPOILPD_00070 | 5.1e-136 | trmD | 2.1.1.228, 4.6.1.12 | J | Belongs to the RNA methyltransferase TrmD family | |
| PAPOILPD_00071 | 0.0 | snf | 2.7.11.1 | KL | domain protein | |
| PAPOILPD_00072 | 3.6e-55 | rplS | J | This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site | ||
| PAPOILPD_00073 | 0.0 | XK27_00340 | 3.1.3.5 | F | Belongs to the 5'-nucleotidase family | |
| PAPOILPD_00074 | 0.0 | S | TerB-C domain | |||
| PAPOILPD_00075 | 9.2e-245 | P | P-loop Domain of unknown function (DUF2791) | |||
| PAPOILPD_00076 | 0.0 | lhr | L | DEAD DEAH box helicase | ||
| PAPOILPD_00077 | 9.2e-95 | |||||
| PAPOILPD_00078 | 1e-148 | glnH | ET | ABC transporter substrate-binding protein | ||
| PAPOILPD_00079 | 2.8e-146 | glcU | U | ribose uptake protein RbsU | ||
| PAPOILPD_00080 | 1.3e-113 | lexA | 3.4.21.88 | K | Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair | |
| PAPOILPD_00081 | 2.6e-33 | ynzC | S | UPF0291 protein | ||
| PAPOILPD_00082 | 2.3e-31 | yneF | S | Uncharacterised protein family (UPF0154) | ||
| PAPOILPD_00083 | 0.0 | mdlA | V | ABC transporter | ||
| PAPOILPD_00084 | 0.0 | mdlB | V | ABC transporter | ||
| PAPOILPD_00085 | 1.4e-69 | pheB | 5.4.99.5 | S | Belongs to the UPF0735 family | |
| PAPOILPD_00086 | 5e-207 | hom | 1.1.1.3 | E | homoserine dehydrogenase | |
| PAPOILPD_00087 | 1.4e-215 | yclM | 2.7.2.4 | E | Belongs to the aspartokinase family | |
| PAPOILPD_00088 | 9.1e-181 | asd | 1.2.1.11 | E | Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate | |
| PAPOILPD_00089 | 2.7e-157 | L | Transposase | |||
| PAPOILPD_00090 | 1.1e-65 | rpsI | J | Belongs to the universal ribosomal protein uS9 family | ||
| PAPOILPD_00091 | 1.2e-76 | rplM | J | This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly | ||
| PAPOILPD_00092 | 3.9e-150 | truA | 5.4.99.12 | J | Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs | |
| PAPOILPD_00093 | 2.6e-141 | ecfT | U | Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates | ||
| PAPOILPD_00094 | 3.7e-162 | ecfA | 3.6.3.55 | P | ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates | |
| PAPOILPD_00095 | 6.9e-153 | ecfA1 | P | ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates | ||
| PAPOILPD_00096 | 1.3e-61 | rplQ | J | Ribosomal protein L17 | ||
| PAPOILPD_00097 | 1.4e-170 | rpoA | 2.7.7.6 | K | DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates | |
| PAPOILPD_00098 | 1.2e-62 | rpsK | J | Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome | ||
| PAPOILPD_00099 | 7.2e-56 | rpsM | J | Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits | ||
| PAPOILPD_00100 | 8.4e-34 | infA | J | One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex | ||
| PAPOILPD_00101 | 1.9e-118 | adk | 2.7.4.3 | F | Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism | |
| PAPOILPD_00102 | 2.6e-236 | secY | U | The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently | ||
| PAPOILPD_00103 | 1.8e-72 | rplO | J | Binds to the 23S rRNA | ||
| PAPOILPD_00104 | 1.3e-24 | rpmD | J | Ribosomal protein L30 |
Showing 1 to 100 of 1,804 entries
eggNOG-mapper v2 (Database: eggNOG v5.0, Jul. 2018 release)