GCA_003790365.1 - 3 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

RJWE01000101.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 3.1	T3PKS	1	3,863

RJWE01000103.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 5.1	lanthipeptide-class-ii	1	3,735

RJWE01000087.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 144.1	RiPP-like	1	5,663

Region	Type	From	To	Similarity
Region 3.1	T3PKS	1	3,863
Region 5.1	lanthipeptide-class-ii	1	3,735
Region 144.1	RiPP-like	1	5,663

Compact view

RJWE01000101.1 - Region 1 - T3PKS

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Location: 1 - 3,863 nt. (total: 3,863 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

RJWE01000103.1 - Region 1 - lanthipeptide-class-ii

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Location: 1 - 3,735 nt. (total: 3,735 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide-class-ii: cds(LANC_like and DUF4135)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Lanthipeptides

KnownClusterBlast

Lanthipeptide predictions

Lanthipeptide(s) for ctg5_1 - Putative Class II

ctg5_3 leader / core peptide: MDKEKLEKIVGNNFEEMSLQKMTEIQGM - GEYQVDDhaDhbPAADhaAIDhaRADhbIQVDhaRADhaDhaGKCLDhaWGDhaGAAFDhaAYFDhbHKRWC

Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine

Similar known gene clusters

No matches found.

Lanthipeptides

Core peptide predictions

ctg5_3 - Class II

Cleavage pHMM score: -2.10

RODEO score: 0

Monoisotopic mass: 4879.4 Da

Molecular weight: 4882.4 Da

Number of bridges: 2

Alternative weights: (assuming N unmodified Ser/Thr residues); 4900.4 Da N = 1; 4918.4 Da N = 2; 4936.4 Da N = 3; 4954.4 Da N = 4; 4972.5 Da N = 5; 4990.5 Da N = 6; 5008.5 Da N = 7; 5026.5 Da N = 8; 5044.5 Da N = 9; 5062.6 Da N = 10

RJWE01000087.1 - Region 1 - RiPP-like

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Location: 1 - 5,663 nt. (total: 5,663 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.